Variant report

Variant	rs35238630
Chromosome Location	chr6:71713154-71713155
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10960766	0.93[EUR][1000 genomes]
rs10960767	0.93[EUR][1000 genomes]
rs10960768	0.93[EUR][1000 genomes]
rs11787674	0.88[EUR][1000 genomes]
rs11787999	0.90[EUR][1000 genomes]
rs11788192	0.93[EUR][1000 genomes]
rs11789339	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11789481	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11789805	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791137	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11791392	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11791497	0.85[EUR][1000 genomes]
rs11791954	0.88[EUR][1000 genomes]
rs11793178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793280	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11794050	0.93[EUR][1000 genomes]
rs11794202	0.93[EUR][1000 genomes]
rs11795082	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12001299	0.93[EUR][1000 genomes]
rs12001737	0.93[EUR][1000 genomes]
rs12001745	0.93[EUR][1000 genomes]
rs12001885	0.93[EUR][1000 genomes]
rs12001964	0.93[EUR][1000 genomes]
rs12005881	0.93[EUR][1000 genomes]
rs16929383	0.90[EUR][1000 genomes]
rs16929385	0.90[EUR][1000 genomes]
rs16929391	0.90[EUR][1000 genomes]
rs16929400	0.88[EUR][1000 genomes]
rs16929473	0.93[EUR][1000 genomes]
rs17280279	0.86[EUR][1000 genomes]
rs17280629	0.90[EUR][1000 genomes]
rs17346748	0.90[EUR][1000 genomes]
rs2209278	0.90[EUR][1000 genomes]
rs34509359	0.90[EUR][1000 genomes]
rs35852762	0.93[EUR][1000 genomes]
rs35856256	0.90[AFR][1000 genomes]
rs35866166	0.90[EUR][1000 genomes]
rs3891858	0.88[EUR][1000 genomes]
rs41306290	0.90[EUR][1000 genomes]
rs4281192	0.90[AFR][1000 genomes]
rs61758391	0.88[EUR][1000 genomes]
rs61758394	0.88[EUR][1000 genomes]
rs62638049	0.88[EUR][1000 genomes]
rs7025241	0.93[EUR][1000 genomes]
rs7025758	0.93[EUR][1000 genomes]
rs7026121	0.93[EUR][1000 genomes]
rs7026199	0.93[EUR][1000 genomes]
rs7030751	0.98[EUR][1000 genomes]
rs7033962	0.98[EUR][1000 genomes]
rs7040346	0.90[EUR][1000 genomes]
rs7041590	0.93[EUR][1000 genomes]
rs7041735	0.93[EUR][1000 genomes]
rs71507329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73402088	0.93[EUR][1000 genomes]
rs73402092	0.93[EUR][1000 genomes]
rs768617	0.90[EUR][1000 genomes]
rs7875424	0.90[EUR][1000 genomes]
rs7876041	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71695600-71716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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