Variant report

Variant	rs35250604
Chromosome Location	chr1:225665901-225665902
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225664480..225667161-chr1:225903900..225905865,2	K562	blood:
2	chr1:225665630..225667137-chr1:226308801..226311216,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv34905	chr1:225631404-225676582	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873227	chr1:225656388-225687981	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv8880	chr1:225656408-225687710	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv826842	chr1:225658062-225686586	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv441740	chr1:225659217-225684196	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv433350	chr1:225665284-225686025	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv873228	chr1:225665284-225687981	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
10	esv2753202	chr1:225665694-225676571	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a
11	esv2756886	chr1:225665694-225703485	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
12	esv2759003	chr1:225665694-225703485	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225655600-225677000	Weak transcription	Right Atrium	heart
2	chr1:225660600-225666200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:225660800-225666200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:225660800-225666200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:225660800-225666800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:225661000-225666200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:225661000-225666200	Enhancers	Fetal Thymus	thymus
8	chr1:225662000-225667000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:225662200-225671800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:225662600-225671800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:225663200-225666200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:225663200-225668600	Weak transcription	Fetal Intestine Large	intestine
13	chr1:225663200-225668600	Weak transcription	Pancreas	Pancrea
14	chr1:225663200-225668600	Weak transcription	Stomach Mucosa	stomach
15	chr1:225663200-225668800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:225663200-225668800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:225663200-225669800	Weak transcription	Ovary	ovary
18	chr1:225663200-225670200	Weak transcription	Osteobl	bone
19	chr1:225663200-225683800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:225663200-225686400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:225663200-225696400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:225663400-225667400	Weak transcription	Fetal Brain Male	brain
23	chr1:225663400-225668400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:225663400-225668800	Weak transcription	Brain Germinal Matrix	brain
25	chr1:225663400-225668800	Weak transcription	Fetal Brain Female	brain
26	chr1:225663400-225668800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:225663400-225669000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:225663400-225669600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:225663400-225686000	Weak transcription	A549	lung
30	chr1:225663800-225666000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:225663800-225666200	Enhancers	Primary T cells from cord blood	blood
32	chr1:225663800-225666200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr1:225663800-225666200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr1:225664000-225666200	Enhancers	GM12878-XiMat	blood
35	chr1:225664000-225667200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:225664000-225670000	Enhancers	Primary B cells from peripheral blood	blood
37	chr1:225665000-225666000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:225665000-225666200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr1:225665000-225666400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:225665200-225666000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr1:225665200-225666000	Enhancers	HMEC	breast
42	chr1:225665200-225670400	Enhancers	Primary B cells from cord blood	blood
43	chr1:225665400-225666000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:225665400-225666000	Enhancers	Esophagus	oesophagus
45	chr1:225665400-225666000	Enhancers	Fetal Muscle Trunk	muscle
46	chr1:225665400-225666200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr1:225665400-225666200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:225665400-225666200	Enhancers	Fetal Muscle Leg	muscle
49	chr1:225665600-225666000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr1:225665600-225666000	Enhancers	Spleen	Spleen

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