Variant report

Variant	rs35251985
Chromosome Location	chr8:59015093-59015094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10551162	0.81[EUR][1000 genomes]
rs13266191	0.80[EUR][1000 genomes]
rs13271652	0.80[EUR][1000 genomes]
rs17175804	0.80[EUR][1000 genomes]
rs6471684	0.81[EUR][1000 genomes]
rs7004271	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:59011000-59031600	Weak transcription	Liver	Liver
3	chr8:59011400-59019000	Weak transcription	Ovary	ovary
4	chr8:59011400-59021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
6	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:59011600-59015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:59011600-59016200	Weak transcription	Right Ventricle	heart
10	chr8:59011600-59017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:59011600-59017600	Weak transcription	Right Atrium	heart
12	chr8:59011600-59020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:59011600-59021000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:59011600-59021000	Weak transcription	Lung	lung
15	chr8:59011600-59025400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
17	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:59011600-59031800	Weak transcription	Gastric	stomach
19	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
20	chr8:59011800-59020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:59011800-59020800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:59013400-59020800	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:59014200-59015400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:59014200-59015400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:59014200-59015600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:59014200-59015600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr8:59014400-59015200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr8:59014400-59016800	Enhancers	Fetal Heart	heart
29	chr8:59014600-59015200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr8:59014600-59015400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:59014600-59021000	Weak transcription	Fetal Stomach	stomach
32	chr8:59014600-59025800	Weak transcription	HSMMtube	muscle
33	chr8:59014800-59015200	Weak transcription	Psoas Muscle	Psoas
34	chr8:59014800-59015400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr8:59014800-59016200	Weak transcription	Fetal Brain Male	brain
36	chr8:59014800-59019200	Weak transcription	Fetal Lung	lung
37	chr8:59014800-59020800	Weak transcription	HSMM	muscle
38	chr8:59014800-59025000	Weak transcription	NHDF-Ad	bronchial
39	chr8:59014800-59028200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
41	chr8:59015000-59015200	Enhancers	Aorta	Aorta
42	chr8:59015000-59015200	Enhancers	Left Ventricle	heart
43	chr8:59015000-59017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:59015000-59028600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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