Variant report
| Variant | rs352524 |
|---|---|
| Chromosome Location | chr6:69199006-69199007 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr6:69198892-69199032 | HepG2 | liver: | n/a | chr6:69198973-69198984 chr6:69198973-69198984 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266675 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs2249399 | 1.00[CEU][hapmap] |
| rs2250130 | 1.00[CEU][hapmap] |
| rs2585591 | 1.00[CEU][hapmap] |
| rs2802685 | 1.00[CEU][hapmap] |
| rs2802686 | 1.00[CEU][hapmap] |
| rs2802695 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415097 | chr6:68536406-69244164 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020545 | chr6:69119445-69310136 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv463147 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv603607 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv830680 | chr6:69192214-69351103 | Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 7 | esv3369344 | chr6:69198542-69199208 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
