Variant report

Variant	rs352545
Chromosome Location	chr6:69186491-69186492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1388049	0.93[EUR][1000 genomes]
rs3011912	0.97[EUR][1000 genomes]
rs3011914	0.97[EUR][1000 genomes]
rs352516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs352518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4521544	0.95[EUR][1000 genomes]
rs6915960	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415097	chr6:68536406-69244164	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020436	chr6:68969091-69197831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538300	chr6:68969091-69197831	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3411569	chr6:68997654-69198750	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv463147	chr6:69185660-69242020	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv603607	chr6:69185660-69242020	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69185600-69187400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:69185800-69186800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:69185800-69187600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69186000-69187600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:69186200-69187600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:69186200-69187800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:69186400-69187600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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