Variant report

Variant	rs35258964
Chromosome Location	chr7:117374434-117374435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116604327-116608063..7:117373403-117375287	H1-hESC	embryonic stem cell:	embryo
2	chr7:117373911..117375838-chr7:117379678..117382405,2	MCF-7	breast:
3	chr7:117370526..117372524-chr7:117372686..117375672,2	K562	blood:

Variant related genes	Relation type
ENSG00000228368	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17140391	1.00[AMR][1000 genomes]
rs33999370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34312798	1.00[AMR][1000 genomes]
rs34329593	1.00[AMR][1000 genomes]
rs34337653	1.00[AMR][1000 genomes]
rs34630325	0.92[AFR][1000 genomes]
rs34976943	1.00[AMR][1000 genomes]
rs35189997	1.00[AMR][1000 genomes]
rs35538076	1.00[AMR][1000 genomes]
rs35690931	1.00[AMR][1000 genomes]
rs36059768	1.00[AMR][1000 genomes]
rs6954703	1.00[AMR][1000 genomes]
rs6961987	1.00[AMR][1000 genomes]
rs981888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:117353200-117384600	Weak transcription	Ovary	ovary
4	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:117356800-117376000	Weak transcription	NH-A	brain
8	chr7:117357200-117374800	Weak transcription	Pancreas	Pancrea
9	chr7:117357600-117375400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
12	chr7:117360600-117374800	Weak transcription	Left Ventricle	heart
13	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:117364000-117375400	Strong transcription	Fetal Brain Female	brain
16	chr7:117364200-117376600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:117365400-117380800	Weak transcription	Fetal Brain Male	brain
18	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:117367000-117376200	Weak transcription	Gastric	stomach
20	chr7:117369600-117384000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:117370400-117374800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:117370400-117380000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:117371200-117377200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:117371600-117375400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:117371600-117376600	Weak transcription	Right Ventricle	heart
26	chr7:117371600-117381600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:117371800-117396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:117372000-117380200	Weak transcription	Fetal Intestine Large	intestine
29	chr7:117372000-117395800	Weak transcription	Fetal Intestine Small	intestine
30	chr7:117372600-117377000	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr7:117372800-117375200	Strong transcription	Adipose Nuclei	Adipose
32	chr7:117373200-117375200	Strong transcription	Brain Cingulate Gyrus	brain
33	chr7:117373200-117375400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:117373200-117375600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:117373200-117377000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:117373200-117379400	Strong transcription	Fetal Lung	lung
37	chr7:117373400-117375200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:117373400-117375200	Strong transcription	NHLF	lung
39	chr7:117373600-117374600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr7:117373600-117375200	Strong transcription	Brain Hippocampus Middle	brain
41	chr7:117373600-117375400	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr7:117373800-117375200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr7:117373800-117375200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:117373800-117375200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:117373800-117375200	Strong transcription	Aorta	Aorta
46	chr7:117373800-117375200	Strong transcription	Fetal Stomach	stomach
47	chr7:117373800-117375400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:117373800-117375400	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:117373800-117375400	Strong transcription	Esophagus	oesophagus
50	chr7:117374000-117374800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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