Variant report

Variant	rs352610
Chromosome Location	chr5:106888783-106888784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs341273	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs341275	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs342602	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs342605	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs342606	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs352603	0.82[ASW][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs352604	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs352606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs352607	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs457369	0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs849520	0.93[CEU][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106878800-106891600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:106879000-106893000	Weak transcription	Psoas Muscle	Psoas
3	chr5:106879000-106899200	Weak transcription	Fetal Stomach	stomach
4	chr5:106879400-106888800	Weak transcription	HMEC	breast
5	chr5:106879800-106888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:106880200-106889000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:106881400-106889000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:106881600-106899600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:106883400-106890000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:106883800-106890200	Weak transcription	Fetal Kidney	kidney
11	chr5:106884600-106896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:106884800-106889600	Enhancers	Fetal Heart	heart
13	chr5:106885200-106888800	Weak transcription	HSMMtube	muscle
14	chr5:106885200-106889000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:106885400-106892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:106885600-106888800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:106885600-106888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:106885600-106888800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:106885600-106888800	Weak transcription	Left Ventricle	heart
20	chr5:106885600-106889000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:106885600-106889000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:106885600-106889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:106885600-106889000	Weak transcription	Aorta	Aorta
24	chr5:106885600-106892800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:106885600-106893000	Weak transcription	Esophagus	oesophagus
26	chr5:106885600-106893200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:106885600-106894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:106885600-106896400	Weak transcription	Right Atrium	heart
29	chr5:106887000-106889000	Enhancers	A549	lung
30	chr5:106887200-106888800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:106887200-106889000	Enhancers	Osteobl	bone
32	chr5:106887200-106889400	Enhancers	NHDF-Ad	bronchial
33	chr5:106887200-106890600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:106887200-106899400	Weak transcription	Fetal Lung	lung
35	chr5:106887200-106906800	Weak transcription	Right Ventricle	heart
36	chr5:106887400-106889200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:106887400-106890400	Weak transcription	Adipose Nuclei	Adipose
38	chr5:106887800-106889600	Enhancers	NHLF	lung
39	chr5:106887800-106889800	Enhancers	HSMM	muscle
40	chr5:106887800-106891600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:106888000-106889200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:106888000-106890800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:106888200-106889000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:106888200-106889000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr5:106888200-106889000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:106888400-106889200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:106888400-106889200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:106888600-106889200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr5:106888600-106889400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:106888600-106889400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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