Variant report

Variant	rs35266169
Chromosome Location	chr2:152327493-152327494
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13021010	1.00[AMR][1000 genomes]
rs34446552	1.00[AMR][1000 genomes]
rs35625172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35943488	1.00[AMR][1000 genomes]
rs56805351	1.00[AMR][1000 genomes]
rs71350102	1.00[AMR][1000 genomes]
rs71415141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1012139	chr2:152114637-152389516	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1011339	chr2:152114637-152392940	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv999748	chr2:152135514-152476396	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv834418	chr2:152205803-152385516	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv933869	chr2:152308156-152391576	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv437298	chr2:152320118-152356361	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3693428	chr2:152320932-152434896	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv438374	chr2:152322095-152331418	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152267600-152379400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:152267800-152340400	Weak transcription	Stomach Mucosa	stomach
3	chr2:152268000-152342800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:152268200-152327800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:152268200-152328400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr2:152268200-152328600	Strong transcription	Fetal Thymus	thymus
7	chr2:152268400-152327800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:152268600-152327800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:152268600-152334400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:152268600-152342600	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:152268800-152327800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:152268800-152327800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:152272400-152327800	Strong transcription	Dnd41	blood
14	chr2:152283800-152334000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr2:152284600-152327800	Strong transcription	HepG2	liver
16	chr2:152285000-152327800	Strong transcription	Placenta	Placenta
17	chr2:152285200-152327600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:152285200-152327800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:152285200-152331200	Strong transcription	Adipose Nuclei	Adipose
20	chr2:152294600-152327800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:152294800-152327800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr2:152295800-152348400	Weak transcription	Right Ventricle	heart
23	chr2:152298600-152327600	Strong transcription	HUVEC	blood vessel
24	chr2:152300000-152333400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:152300200-152327800	Strong transcription	K562	blood
26	chr2:152301800-152343800	Weak transcription	Gastric	stomach
27	chr2:152304800-152354000	Weak transcription	Spleen	Spleen
28	chr2:152306800-152328400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr2:152307000-152328000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr2:152307600-152327600	Strong transcription	Primary B cells from cord blood	blood
31	chr2:152307600-152327800	Strong transcription	HSMM	muscle
32	chr2:152307600-152328000	Strong transcription	Liver	Liver
33	chr2:152309000-152327800	Strong transcription	Fetal Intestine Large	intestine
34	chr2:152312000-152327600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr2:152314000-152344000	Weak transcription	Esophagus	oesophagus
36	chr2:152314000-152349400	Weak transcription	Pancreas	Pancrea
37	chr2:152315000-152327600	Strong transcription	HMEC	breast
38	chr2:152315000-152327800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:152315200-152328400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr2:152315400-152327800	Strong transcription	NH-A	brain
41	chr2:152316000-152328400	Strong transcription	Fetal Lung	lung
42	chr2:152316600-152327600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:152316600-152328000	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:152316800-152328400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:152316800-152328600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:152316800-152329000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:152317000-152327600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:152317000-152327800	Strong transcription	Brain Germinal Matrix	brain
49	chr2:152317000-152328000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr2:152317200-152328000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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