Variant report

Variant	rs352679
Chromosome Location	chr1:160677590-160677591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160675860..160678038-chr1:160680233..160682705,2	K562	blood:

Variant related genes	Relation type
ENSG00000117091	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11580216	0.81[EUR][1000 genomes]
rs11584616	0.81[EUR][1000 genomes]
rs34154650	0.80[EUR][1000 genomes]
rs35206837	0.81[EUR][1000 genomes]
rs352677	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35474473	0.81[EUR][1000 genomes]
rs3766369	0.81[EUR][1000 genomes]
rs3914855	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv437213	chr1:160652730-160681836	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160673000-160681200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:160673400-160681000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:160674200-160681000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:160675200-160680800	Weak transcription	Spleen	Spleen
5	chr1:160675600-160677600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:160675600-160678000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr1:160676000-160678800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr1:160676000-160679800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:160676000-160680400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr1:160676000-160680600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr1:160676200-160677800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:160676200-160678000	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr1:160676200-160678000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:160676200-160680200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:160676200-160680400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
16	chr1:160676200-160682800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr1:160676400-160680200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
18	chr1:160676400-160680400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr1:160676400-160682800	Flanking Active TSS	Dnd41	blood
20	chr1:160676600-160678600	Flanking Active TSS	Primary B cells from peripheral blood	blood
21	chr1:160676600-160678600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr1:160676600-160679000	Active TSS	Duodenum Mucosa	Duodenum
23	chr1:160676600-160680000	Flanking Active TSS	Thymus	Thymus
24	chr1:160676800-160678000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
25	chr1:160676800-160679000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr1:160676800-160679200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:160676800-160679600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr1:160676800-160679800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr1:160676800-160682800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr1:160677000-160677600	Enhancers	Adipose Nuclei	Adipose
31	chr1:160677000-160679400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:160677200-160677600	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
33	chr1:160677200-160677600	Enhancers	Placenta	Placenta
34	chr1:160677200-160677600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr1:160677200-160677800	Active TSS	Colonic Mucosa	Colon
36	chr1:160677200-160677800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr1:160677200-160678000	Active TSS	Rectal Smooth Muscle	rectum
38	chr1:160677400-160677800	Enhancers	Liver	Liver
39	chr1:160677400-160677800	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr1:160677400-160681600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--

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