Variant report

Variant	rs35271797
Chromosome Location	chr8:10822844-10822845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13267199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4840523	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10819600-10823000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:10819800-10823000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:10822200-10823000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:10822200-10823000	Enhancers	Fetal Brain Female	brain
5	chr8:10822200-10823200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10822200-10823600	Enhancers	Fetal Brain Male	brain
7	chr8:10822400-10823600	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:10822400-10823800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:10822400-10824000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr8:10822600-10823000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr8:10822600-10823400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:10822600-10823600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:10822600-10823600	Enhancers	Brain Anterior Caudate	brain
14	chr8:10822600-10823800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:10822600-10823800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr8:10822800-10823000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:10822800-10823000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:10822800-10823000	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:10822800-10823000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:10822800-10823200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:10822800-10823200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr8:10822800-10823200	Enhancers	Lung	lung
23	chr8:10822800-10823400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr8:10822800-10823400	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr8:10822800-10823600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr8:10822800-10823800	Enhancers	GM12878-XiMat	blood

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