Variant report

Variant	rs35278902
Chromosome Location	chr3:113239021-113239022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113216822..113219310-chr3:113237513..113239458,2	MCF-7	breast:
2	chr3:113229615..113239929-chr3:113247196..113257849,45	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072858	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10511326	0.90[ASN][1000 genomes]
rs13064411	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13065651	0.88[EUR][1000 genomes]
rs13066742	0.87[ASN][1000 genomes]
rs13067967	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13083453	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13086266	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13087452	0.87[ASN][1000 genomes]
rs13098166	0.87[ASN][1000 genomes]
rs1486894	0.87[ASN][1000 genomes]
rs1486897	0.90[ASN][1000 genomes]
rs1552432	0.95[ASN][1000 genomes]
rs16860849	0.86[EUR][1000 genomes]
rs16861158	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1872747	0.84[ASN][1000 genomes]
rs2018912	0.88[EUR][1000 genomes]
rs2399479	0.95[ASN][1000 genomes]
rs34049435	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34056827	0.88[EUR][1000 genomes]
rs34286076	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34680203	0.88[EUR][1000 genomes]
rs34844841	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35274817	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35765657	0.88[EUR][1000 genomes]
rs35860985	0.87[ASN][1000 genomes]
rs36054418	0.87[ASN][1000 genomes]
rs36108475	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3732803	0.85[ASN][1000 genomes]
rs3732809	0.86[EUR][1000 genomes]
rs4425226	0.87[ASN][1000 genomes]
rs4484165	0.87[ASN][1000 genomes]
rs55693215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60279293	0.94[EUR][1000 genomes]
rs61366244	0.88[EUR][1000 genomes]
rs6438149	0.84[ASN][1000 genomes]
rs6438156	0.87[ASN][1000 genomes]
rs6438157	0.87[ASN][1000 genomes]
rs6438158	0.93[ASN][1000 genomes]
rs6438159	0.93[ASN][1000 genomes]
rs6438161	0.95[ASN][1000 genomes]
rs66866534	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67211112	0.95[ASN][1000 genomes]
rs6766615	0.93[ASN][1000 genomes]
rs6768648	0.95[ASN][1000 genomes]
rs6768979	0.87[ASN][1000 genomes]
rs6769516	0.93[ASN][1000 genomes]
rs6773497	0.84[ASN][1000 genomes]
rs6783965	0.87[ASN][1000 genomes]
rs6786974	0.84[ASN][1000 genomes]
rs6787026	0.84[ASN][1000 genomes]
rs6798938	0.93[ASN][1000 genomes]
rs6799610	1.00[ASN][1000 genomes]
rs722392	0.95[ASN][1000 genomes]
rs7613546	0.95[ASN][1000 genomes]
rs7622740	0.87[ASN][1000 genomes]
rs7631082	0.87[ASN][1000 genomes]
rs7631138	0.95[ASN][1000 genomes]
rs869342	0.95[ASN][1000 genomes]
rs869343	0.95[ASN][1000 genomes]
rs9808893	0.93[ASN][1000 genomes]
rs9814395	0.84[ASN][1000 genomes]
rs9825827	0.84[ASN][1000 genomes]
rs9835848	0.84[ASN][1000 genomes]
rs9836396	0.84[ASN][1000 genomes]
rs9839921	0.87[ASN][1000 genomes]
rs9844447	0.87[ASN][1000 genomes]
rs9872168	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35278902	SIDT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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