Variant report

Variant	rs35286997
Chromosome Location	chr8:48965198-48965199
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48957775..48961134-chr8:48963246..48966717,4	K562	blood:
2	chr8:48957775..48961134-chr8:48963246..48966621,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2758156	chr8:48788293-49008014	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2759611	chr8:48788293-49008014	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv427820	chr8:48788293-49008014	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831309	chr8:48815290-48977856	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv890850	chr8:48954143-49018790	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv890851	chr8:48954143-49031082	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1793797	chr8:48955683-48992093	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1798949	chr8:48960737-48976333	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv890852	chr8:48964607-49022082	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv890853	chr8:48964607-49031082	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1025169	chr8:48965133-49024711	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1020050	chr8:48965133-49028634	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1033298	chr8:48965133-49048832	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48921800-48966800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:48922400-48975400	Weak transcription	Fetal Brain Male	brain
3	chr8:48953200-48983400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:48953800-48974800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:48954200-48965800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:48954400-48967000	Strong transcription	Placenta	Placenta
7	chr8:48954600-48966000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:48954600-48975200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:48954600-48975600	Weak transcription	Pancreas	Pancrea
10	chr8:48954800-48966000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr8:48954800-48971800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:48954800-48975800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr8:48955000-48965800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:48955000-48975000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:48955200-48965800	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:48955400-48969600	Strong transcription	Dnd41	blood
17	chr8:48955600-48965800	Strong transcription	Fetal Thymus	thymus
18	chr8:48955600-48966200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:48955600-48967000	Strong transcription	Adipose Nuclei	Adipose
20	chr8:48955800-48965800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:48955800-48975000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr8:48956000-48965800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:48956000-48967000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr8:48956000-48974800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:48956200-48965400	Strong transcription	Osteobl	bone
26	chr8:48956400-48965800	Strong transcription	Fetal Lung	lung
27	chr8:48956800-48965800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr8:48956800-48973200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:48957200-48965200	Weak transcription	Psoas Muscle	Psoas
30	chr8:48957200-48975400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:48957600-48974400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:48958000-48980600	Weak transcription	Small Intestine	intestine
33	chr8:48958200-48975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:48958600-48966800	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:48959400-48969600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:48959400-48969600	Strong transcription	Liver	Liver
37	chr8:48959600-48965400	Strong transcription	A549	lung
38	chr8:48959600-48973600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:48959800-48965400	Strong transcription	HSMM	muscle
40	chr8:48960400-48965400	Strong transcription	NHDF-Ad	bronchial
41	chr8:48960400-48975800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:48960600-48965800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:48960600-48965800	Strong transcription	Primary B cells from cord blood	blood
44	chr8:48960600-48965800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:48960600-48967800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:48960800-48969400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:48960800-48973400	Weak transcription	Fetal Heart	heart
48	chr8:48961000-48967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:48961000-48975800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:48961000-48976800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links