Variant report

Variant	rs35290121
Chromosome Location	chr15:75073121-75073122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:75073076-75074206	GM12878	blood:	n/a	n/a
2	MAZ	chr15:75073083-75075066	GM12878	blood:	n/a	chr15:75074887-75074897 chr15:75074297-75074306
3	BCLAF1	chr15:75072965-75074853	GM12878	blood:	n/a	chr15:75074511-75074524 chr15:75074495-75074504 chr15:75074499-75074512 chr15:75074507-75074520 chr15:75074593-75074606 chr15:75074498-75074507 chr15:75074495-75074508 chr15:75074594-75074607 chr15:75074496-75074509 chr15:75074493-75074506
4	EBF1	chr15:75072789-75073615	GM12878	blood:	n/a	n/a
5	MTA3	chr15:75072575-75074324	GM12878	blood:	n/a	n/a
6	MAX	chr15:75072957-75074557	GM12878	blood:	n/a	chr15:75074297-75074306
7	POLR2A	chr15:75072958-75073749	GM12878	blood:	n/a	n/a
8	NFATC1	chr15:75073094-75073758	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:75072747-75076658	GM15510	blood:	n/a	n/a
10	POLR2A	chr15:75073043-75073737	GM12892	blood:	n/a	n/a
11	ELF1	chr15:75072841-75073503	GM12878	blood:	n/a	n/a
12	RUNX3	chr15:75072495-75074433	GM12878	blood:	n/a	n/a
13	STAT3	chr15:75072782-75073843	GM12878	blood:	n/a	chr15:75073158-75073170
14	PAX5	chr15:75073015-75073507	GM12878	blood:	n/a	chr15:75073158-75073167 chr15:75073196-75073214 chr15:75073381-75073398
15	CHD1	chr15:75072626-75075303	GM12878	blood:	n/a	chr15:75074975-75074985
16	STAT5A	chr15:75072728-75074343	GM12878	blood:	n/a	chr15:75073158-75073170
17	PAX5	chr15:75073038-75073374	GM12878	blood:	n/a	chr15:75073158-75073167 chr15:75073196-75073214
18	WRNIP1	chr15:75072852-75074309	GM12878	blood:	n/a	n/a
19	EBF1	chr15:75072858-75073908	GM12878	blood:	n/a	n/a
20	POLR2A	chr15:75072928-75073460	GM12878	blood:	n/a	n/a
21	POLR2A	chr15:75072814-75083294	GM19099	blood:	n/a	n/a
22	POLR2A	chr15:75072482-75083351	GM12878	blood:	n/a	n/a
23	POLR2A	chr15:75072317-75074453	SK-N-MC	brain:	n/a	n/a
24	POLR2A	chr15:75072246-75074809	GM12891	blood:	n/a	n/a
25	POLR2A	chr15:75072585-75073561	GM12892	blood:	n/a	n/a
26	POLR2A	chr15:75073018-75073500	GM12878	blood:	n/a	n/a
27	POLR2A	chr15:75072776-75076691	GM12892	blood:	n/a	n/a
28	MAX	chr15:75073077-75074774	HepG2	liver:	n/a	chr15:75074297-75074306
29	RELA	chr15:75072625-75074485	GM18951	blood:	n/a	n/a
30	RCOR1	chr15:75072631-75074461	GM12878	blood:	n/a	n/a
31	STAT5A	chr15:75072615-75074129	GM12878	blood:	n/a	chr15:75072684-75072696 chr15:75073158-75073170 chr15:75072651-75072662
32	POLR2A	chr15:75072912-75077100	GM19193	blood:	n/a	n/a
33	POLR2A	chr15:75072649-75074283	GM12878	blood:	n/a	n/a
34	POLR2A	chr15:75073091-75076671	HL-60	blood:	n/a	n/a
35	POLR2A	chr15:75073001-75073512	GM12891	blood:	n/a	n/a
36	PML	chr15:75072475-75074422	GM12878	blood:	n/a	chr15:75074213-75074221
37	POU2F2	chr15:75073121-75074631	GM12878	blood:	n/a	n/a
38	POLR2A	chr15:75073047-75073631	GM12891	blood:	n/a	n/a
39	ZNF143	chr15:75072408-75073143	GM12878	blood:	n/a	chr15:75072545-75072564 chr15:75073067-75073085
40	RELA	chr15:75072551-75074499	GM18505	blood:	n/a	n/a
41	POLR2A	chr15:75072953-75077123	GM18951	blood:	n/a	n/a
42	MTA3	chr15:75072205-75074428	GM12878	blood:	n/a	n/a
43	POLR2A	chr15:75072603-75078342	GM18505	blood:	n/a	n/a
44	POLR2A	chr15:75073043-75073650	GM12892	blood:	n/a	n/a
45	MXI1	chr15:75073023-75074478	GM12878	blood:	n/a	n/a
46	POLR2A	chr15:75072548-75073891	HL-60	blood:	n/a	n/a
47	POLR2A	chr15:75072699-75083327	GM12878	blood:	n/a	n/a
48	ATF2	chr15:75072823-75073781	GM12878	blood:	n/a	n/a
49	SPI1	chr15:75072984-75073320	GM12891	blood:	n/a	chr15:75073158-75073171
50	RELA	chr15:75072784-75074339	GM19099	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75071180..75073699-chr15:75308688..75311602,2	MCF-7	breast:
2	chr15:75072623..75074857-chr15:75134348..75137142,2	K562	blood:
3	chr15:75071239..75073598-chr15:75247193..75248970,3	K562	blood:
4	chr15:75072788..75075776-chr15:75181274..75184204,2	K562	blood:
5	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
6	chr15:74908350..74910118-chr15:75071323..75073781,2	MCF-7	breast:
7	chr15:75072694..75075868-chr15:75228655..75230932,4	K562	blood:
8	chr15:75072740..75076753-chr15:75116483..75119304,4	MCF-7	breast:
9	chr15:75072694..75075672-chr15:75228478..75230738,4	K562	blood:
10	chr15:75071971..75073821-chr15:75084189..75086951,2	K562	blood:
11	chr15:75072881..75075069-chr15:75249092..75251017,2	K562	blood:
12	chr15:75072228..75074857-chr15:75134119..75137193,5	K562	blood:
13	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
14	chr15:75071239..75073598-chr15:75247367..75248970,2	K562	blood:
15	chr15:75072788..75075776-chr15:75181274..75184204,3	K562	blood:
16	chr15:75072261..75077453-chr15:75091040..75094267,5	K562	blood:

Variant related genes	Relation type
CSK	TF binding region
ENSG00000178741	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11553760	0.86[AFR][1000 genomes]
rs16972620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16972628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229729	0.91[ASN][1000 genomes]
rs58050869	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75065600-75073200	Weak transcription	Brain Angular Gyrus	brain
2	chr15:75065600-75073600	Enhancers	Fetal Intestine Large	intestine
3	chr15:75065600-75073600	Enhancers	Fetal Intestine Small	intestine
4	chr15:75067400-75074200	Enhancers	Stomach Mucosa	stomach
5	chr15:75068000-75073200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:75068800-75073400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:75069600-75073800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:75070000-75073200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:75070000-75073200	Weak transcription	Osteobl	bone
10	chr15:75070000-75073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:75070200-75073200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:75070200-75073200	Weak transcription	HSMMtube	muscle
13	chr15:75070200-75073400	Weak transcription	HSMM	muscle
14	chr15:75070200-75073600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:75070400-75073200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:75070400-75073200	Weak transcription	Brain Anterior Caudate	brain
17	chr15:75070400-75073200	Enhancers	Fetal Heart	heart
18	chr15:75070400-75073200	Weak transcription	Left Ventricle	heart
19	chr15:75070400-75073400	Weak transcription	Right Atrium	heart
20	chr15:75070600-75073400	Weak transcription	Brain Substantia Nigra	brain
21	chr15:75070800-75073200	Weak transcription	HUVEC	blood vessel
22	chr15:75071200-75073400	Weak transcription	Lung	lung
23	chr15:75071600-75074200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr15:75071800-75073200	Weak transcription	Small Intestine	intestine
25	chr15:75072200-75073200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:75072200-75073600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:75072200-75073600	Enhancers	Placenta	Placenta
28	chr15:75072200-75074000	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr15:75072200-75074200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:75072200-75074200	Flanking Active TSS	GM12878-XiMat	blood
31	chr15:75072200-75074200	Flanking Active TSS	HepG2	liver
32	chr15:75072200-75074200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr15:75072400-75073200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:75072400-75073200	Enhancers	Fetal Brain Male	brain
35	chr15:75072400-75073200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:75072400-75073400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr15:75072400-75073400	Enhancers	Fetal Lung	lung
38	chr15:75072400-75073600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:75072400-75073600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:75072400-75073600	Enhancers	NHLF	lung
41	chr15:75072400-75074000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr15:75072400-75074200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr15:75072400-75074200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr15:75072400-75074200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr15:75072400-75074200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr15:75072400-75074200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:75072400-75074200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr15:75072400-75074200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr15:75072400-75074200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:75072400-75074200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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