Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54569373..54571728-chr10:54572678..54575356,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10762892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10824814	0.84[EUR][1000 genomes]
rs11003185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11003215	0.81[EUR][1000 genomes]
rs11819277	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12254163	0.84[EUR][1000 genomes]
rs12256304	0.84[EUR][1000 genomes]
rs12414173	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12762596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12762966	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12764383	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12777905	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1343057	0.81[EUR][1000 genomes]
rs1935927	0.81[EUR][1000 genomes]
rs34118358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35317378	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4935363	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4935364	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67923009	0.84[EUR][1000 genomes]
rs7099971	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7100378	0.81[EUR][1000 genomes]
rs71490930	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71500402	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74134400	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9783243	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv831876	chr10:54492511-54649392	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54571800-54574800	Enhancers	Fetal Thymus	thymus
2	chr10:54572600-54575200	Enhancers	Dnd41	blood
3	chr10:54573600-54574800	Enhancers	Thymus	Thymus
4	chr10:54573600-54576400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:54573800-54574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:54574200-54574400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:54574200-54574600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:54574200-54574600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:54574200-54574800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:54574200-54574800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:54574200-54574800	Enhancers	Primary T cells from cord blood	blood
12	chr10:54574200-54574800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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