Variant report

Variant	rs35301988
Chromosome Location	chr4:20394813-20394814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6447958	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6832905	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73250398	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20388800-20396200	Weak transcription	Brain Angular Gyrus	brain
2	chr4:20393200-20405800	Weak transcription	Fetal Lung	lung
3	chr4:20393200-20408800	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:20393400-20395000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:20393400-20395200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:20394400-20395200	Enhancers	Osteobl	bone
7	chr4:20394600-20395000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:20394600-20395600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:20394800-20395200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:20394800-20395200	Enhancers	Brain Hippocampus Middle	brain
11	chr4:20394800-20395600	Enhancers	Aorta	Aorta
12	chr4:20394800-20395600	Enhancers	Brain Anterior Caudate	brain
13	chr4:20394800-20395600	Enhancers	NHDF-Ad	bronchial
14	chr4:20394800-20395800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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