Variant report

Variant	rs35304150
Chromosome Location	chr2:144700837-144700838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144700229..144702979-chr2:145088047..145090222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121964	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1257048	0.80[ASN][1000 genomes]
rs13402935	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs787172	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs787175	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv875260	chr2:144675354-144703126	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144695400-144702800	Weak transcription	Lung	lung
2	chr2:144695400-144704000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:144695400-144707600	Weak transcription	Pancreas	Pancrea
4	chr2:144695400-144714200	Weak transcription	Gastric	stomach
5	chr2:144695600-144704000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:144695600-144708800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:144696000-144704000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:144696000-144704000	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:144696000-144713200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:144696200-144709800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:144696600-144706400	Weak transcription	HSMM	muscle
12	chr2:144696600-144712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:144696600-144717800	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:144697800-144702800	Weak transcription	Primary T cells from cord blood	blood
15	chr2:144697800-144706800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:144698000-144706800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:144698000-144709600	Weak transcription	Aorta	Aorta
18	chr2:144698200-144706600	Weak transcription	NHLF	lung
19	chr2:144698400-144702800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:144698400-144702800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:144698400-144702800	Weak transcription	Fetal Intestine Small	intestine
22	chr2:144698400-144702800	Weak transcription	NHDF-Ad	bronchial
23	chr2:144698400-144703200	Weak transcription	Fetal Brain Female	brain
24	chr2:144698400-144704000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:144698400-144704000	Weak transcription	Fetal Intestine Large	intestine
26	chr2:144698400-144704000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:144698400-144704000	Weak transcription	Spleen	Spleen
28	chr2:144698400-144704200	Weak transcription	Adipose Nuclei	Adipose
29	chr2:144698400-144706600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:144698400-144710800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:144698600-144706400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:144698600-144710400	Weak transcription	Ovary	ovary
33	chr2:144698800-144702800	Weak transcription	Fetal Stomach	stomach
34	chr2:144698800-144707800	Weak transcription	Fetal Kidney	kidney
35	chr2:144699000-144702200	Weak transcription	Fetal Brain Male	brain
36	chr2:144699000-144702600	Weak transcription	Fetal Lung	lung
37	chr2:144699000-144708200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr2:144699600-144730400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:144700200-144702600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:144700200-144702800	Weak transcription	Left Ventricle	heart
41	chr2:144700400-144702600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:144700400-144706000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:144700600-144710000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr2:144700800-144703800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:144700800-144704000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:144700800-144704600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:144700800-144705200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:144700800-144710400	Weak transcription	Small Intestine	intestine
49	chr2:144700800-144719600	Weak transcription	Primary hematopoietic stem cells	blood

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