Variant report

Variant	rs35304308
Chromosome Location	chr3:134101441-134101442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134100431..134103354-chr3:134114088..134116858,2	MCF-7	breast:
2	chr3:134100896..134101491-chr3:134167896..134168544,2	MCF-7	breast:
3	chr3:134099796..134102271-chr3:134165390..134167707,2	MCF-7	breast:
4	chr3:134100220..134102813-chr3:134108741..134110684,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2400273	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7633045	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9847940	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864334	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134096000-134102800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:134097400-134104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:134098000-134101800	Weak transcription	Right Ventricle	heart
4	chr3:134098000-134107200	Weak transcription	Lung	lung
5	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
6	chr3:134100000-134102000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:134100000-134102000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:134100200-134101600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr3:134100200-134101800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:134100200-134102000	Enhancers	Esophagus	oesophagus
11	chr3:134100200-134102000	Enhancers	Stomach Mucosa	stomach
12	chr3:134100800-134101800	Enhancers	HMEC	breast
13	chr3:134101200-134102000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:134101200-134103800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:134101200-134104000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:134101200-134104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:134101200-134104200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:134101200-134106200	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:134101200-134108000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:134101400-134102000	Enhancers	NHEK	skin
21	chr3:134101400-134102200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:134101400-134103800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:134101400-134104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134101400-134104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:134101400-134106600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:134101400-134107400	Weak transcription	Fetal Lung	lung
27	chr3:134101400-134111600	Weak transcription	Pancreas	Pancrea

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