Variant report

Variant	rs35304712
Chromosome Location	chr6:79586367-79586368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79584398..79586825-chr6:79590482..79592953,2	K562	blood:
2	chr6:79583511..79586825-chr6:79590200..79593930,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34943334	1.00[AFR][1000 genomes]
rs71565021	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79577800-79587200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79577800-79587400	Weak transcription	Esophagus	oesophagus
3	chr6:79577800-79597200	Weak transcription	Gastric	stomach
4	chr6:79578200-79586400	Weak transcription	Aorta	Aorta
5	chr6:79578200-79587000	Weak transcription	Fetal Thymus	thymus
6	chr6:79578200-79587200	Weak transcription	Thymus	Thymus
7	chr6:79578200-79587400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:79578200-79587400	Weak transcription	Pancreas	Pancrea
9	chr6:79578200-79589400	Weak transcription	Psoas Muscle	Psoas
10	chr6:79578200-79590800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:79578200-79592400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:79578200-79592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:79578200-79597800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
16	chr6:79578200-79613600	Weak transcription	HSMM	muscle
17	chr6:79578400-79586800	Weak transcription	Brain Anterior Caudate	brain
18	chr6:79578400-79589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:79578400-79589400	Weak transcription	Fetal Brain Male	brain
20	chr6:79578400-79593400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
24	chr6:79578600-79586400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:79578600-79586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:79578600-79586800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:79578600-79587400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:79578600-79593200	Weak transcription	NHEK	skin
29	chr6:79578600-79596000	Weak transcription	Fetal Heart	heart
30	chr6:79578600-79596600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:79578600-79598200	Weak transcription	HUVEC	blood vessel
32	chr6:79578600-79604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:79578600-79612400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:79578600-79618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:79578800-79587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:79578800-79602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:79578800-79608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:79578800-79613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:79581400-79586400	Weak transcription	Brain Germinal Matrix	brain
40	chr6:79581800-79587200	Weak transcription	Fetal Stomach	stomach
41	chr6:79581800-79593600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:79582000-79586800	Weak transcription	Primary T cells from cord blood	blood
43	chr6:79582000-79587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:79582000-79596600	Weak transcription	Ovary	ovary
45	chr6:79582000-79608400	Weak transcription	Fetal Intestine Large	intestine
46	chr6:79584200-79586600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:79584400-79586800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:79584800-79588200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:79584800-79608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:79585200-79588200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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