Variant report

Variant	rs35310771
Chromosome Location	chr1:91923764-91923765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11164774	0.90[ASN][1000 genomes]
rs11799814	0.89[EUR][1000 genomes]
rs12058802	0.90[ASN][1000 genomes]
rs12060889	0.89[EUR][1000 genomes]
rs1395472	0.90[ASN][1000 genomes]
rs1508586	0.89[EUR][1000 genomes]
rs1508587	0.89[EUR][1000 genomes]
rs1876592	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1876593	0.87[ASN][1000 genomes]
rs58884787	0.89[EUR][1000 genomes]
rs6683272	0.82[EUR][1000 genomes]
rs6683496	0.82[EUR][1000 genomes]
rs7513482	0.89[EUR][1000 genomes]
rs7522651	0.89[EUR][1000 genomes]
rs7526693	0.85[EUR][1000 genomes]
rs7526795	0.86[EUR][1000 genomes]
rs7526972	0.89[EUR][1000 genomes]
rs7535665	0.89[EUR][1000 genomes]
rs7542806	0.89[EUR][1000 genomes]
rs7543080	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1005574	chr1:91913621-91923934	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv947496	chr1:91918272-91938103	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3397474	chr1:91923614-91927412	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35310771	CDC7	cis	Skin Sun Exposed Lower leg	GTEx
rs35310771	CDC7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91922200-91924200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:91923400-91924400	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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