Variant report

Variant	rs35316642
Chromosome Location	chr5:178162854-178162855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11942294	0.80[ASN][1000 genomes]
rs12152590	0.89[ASN][1000 genomes]
rs12513220	0.89[ASN][1000 genomes]
rs13106515	0.89[ASN][1000 genomes]
rs13127492	0.89[ASN][1000 genomes]
rs13128653	0.87[AFR][1000 genomes]
rs13133830	0.89[ASN][1000 genomes]
rs13142400	0.86[ASN][1000 genomes]
rs17362224	0.89[ASN][1000 genomes]
rs1949668	0.89[ASN][1000 genomes]
rs1949669	0.89[ASN][1000 genomes]
rs2049181	0.89[ASN][1000 genomes]
rs2139992	0.85[ASN][1000 genomes]
rs34124780	0.89[ASN][1000 genomes]
rs34149126	0.89[ASN][1000 genomes]
rs34274316	0.89[ASN][1000 genomes]
rs34579838	0.89[ASN][1000 genomes]
rs34899172	0.89[ASN][1000 genomes]
rs34962680	0.86[ASN][1000 genomes]
rs35308689	0.89[ASN][1000 genomes]
rs35372192	0.89[ASN][1000 genomes]
rs35969143	0.89[ASN][1000 genomes]
rs36043894	0.86[ASN][1000 genomes]
rs36124988	0.89[ASN][1000 genomes]
rs56200104	0.80[ASN][1000 genomes]
rs62326618	0.89[ASN][1000 genomes]
rs62326619	0.89[ASN][1000 genomes]
rs62327371	0.89[ASN][1000 genomes]
rs62327372	0.89[ASN][1000 genomes]
rs62327373	0.86[ASN][1000 genomes]
rs62327375	0.86[ASN][1000 genomes]
rs62327376	0.86[ASN][1000 genomes]
rs62327381	0.86[ASN][1000 genomes]
rs67407219	0.85[ASN][1000 genomes]
rs72728300	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178149400-178164400	Weak transcription	Fetal Heart	heart

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