Variant report

Variant	rs35328363
Chromosome Location	chr6:36660109-36660110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:
2	chr6:36658059..36660618-chr6:36709664..36711830,2	MCF-7	breast:
3	chr6:36644981..36649007-chr6:36657170..36660306,4	K562	blood:
4	chr6:36659558..36662002-chr6:36724611..36726643,2	MCF-7	breast:
5	chr6:36646719..36650011-chr6:36657952..36660291,4	MCF-7	breast:
6	chr6:36658841..36660500-chr6:36665313..36667930,3	MCF-7	breast:
7	chr6:36659068..36661515-chr6:36679186..36681005,2	MCF-7	breast:
8	chr6:36560786..36563528-chr6:36659372..36662028,2	K562	blood:
9	chr6:36658383..36660114-chr6:36663933..36665549,2	MCF-7	breast:
10	chr6:36650316..36652178-chr6:36659155..36660681,2	MCF-7	breast:
11	chr6:36560786..36563777-chr6:36658792..36660872,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36654800-36660200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:36655000-36660200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:36655000-36660200	Weak transcription	Thymus	Thymus
4	chr6:36655000-36660400	Weak transcription	Stomach Mucosa	stomach
5	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:36655200-36660200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:36655200-36660400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:36655200-36660400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:36655200-36660800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:36655200-36661200	Weak transcription	Aorta	Aorta
11	chr6:36655200-36669400	Weak transcription	Gastric	stomach
12	chr6:36655400-36660400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:36655600-36660200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:36655600-36660200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:36655600-36660200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:36655600-36660800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:36655600-36660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:36655600-36661000	Weak transcription	HSMM	muscle
19	chr6:36655600-36663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:36655800-36660200	Weak transcription	NHDF-Ad	bronchial
21	chr6:36655800-36660600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:36655800-36660800	Weak transcription	Lung	lung
23	chr6:36656000-36660600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:36656000-36661000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:36656200-36665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:36657400-36660200	Enhancers	Primary B cells from cord blood	blood
27	chr6:36657400-36663600	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:36657800-36661200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:36658200-36661200	Enhancers	HMEC	breast
30	chr6:36658400-36661200	Enhancers	NHEK	skin
31	chr6:36658800-36661200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:36658800-36661400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:36658800-36663200	Enhancers	Fetal Heart	heart
34	chr6:36659000-36661000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:36659000-36661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:36659200-36660800	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:36659200-36661000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:36659200-36661000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:36659200-36661000	Enhancers	GM12878-XiMat	blood
40	chr6:36659200-36661200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr6:36659200-36661400	Enhancers	Spleen	Spleen
42	chr6:36659400-36660200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:36659400-36660400	Enhancers	Fetal Intestine Large	intestine
44	chr6:36659400-36660400	Enhancers	Placenta	Placenta
45	chr6:36659400-36660800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:36659400-36660800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr6:36659400-36661000	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:36659400-36661200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr6:36659400-36661200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr6:36659400-36661200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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