Variant report
| Variant | rs35332883 |
|---|---|
| Chromosome Location | chr8:122457197-122457198 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:122457060..122461266-chr8:122463602..122466712,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs10092166 | 0.85[ASN][1000 genomes] |
| rs10097288 | 0.82[ASN][1000 genomes] |
| rs10107596 | 0.85[ASN][1000 genomes] |
| rs10110541 | 0.80[ASN][1000 genomes] |
| rs1027034 | 0.88[ASN][1000 genomes] |
| rs10481146 | 0.82[ASN][1000 genomes] |
| rs10956034 | 0.82[ASN][1000 genomes] |
| rs13272291 | 0.88[ASN][1000 genomes] |
| rs1487172 | 0.82[ASN][1000 genomes] |
| rs1487173 | 0.82[ASN][1000 genomes] |
| rs1487176 | 0.80[ASN][1000 genomes] |
| rs1487177 | 0.80[ASN][1000 genomes] |
| rs1565033 | 0.85[ASN][1000 genomes] |
| rs1565036 | 0.80[ASN][1000 genomes] |
| rs1976123 | 0.82[ASN][1000 genomes] |
| rs2046569 | 0.85[ASN][1000 genomes] |
| rs2386120 | 0.82[ASN][1000 genomes] |
| rs2891902 | 0.85[ASN][1000 genomes] |
| rs35443385 | 0.88[ASN][1000 genomes] |
| rs4871190 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs5018304 | 0.85[ASN][1000 genomes] |
| rs6469999 | 0.85[ASN][1000 genomes] |
| rs67804564 | 0.88[AFR][1000 genomes] |
| rs6984258 | 0.85[ASN][1000 genomes] |
| rs6984809 | 0.85[ASN][1000 genomes] |
| rs6991327 | 0.85[ASN][1000 genomes] |
| rs6991350 | 0.85[ASN][1000 genomes] |
| rs6993630 | 0.87[ASN][1000 genomes] |
| rs6997172 | 0.85[ASN][1000 genomes] |
| rs7004129 | 0.82[ASN][1000 genomes] |
| rs7004316 | 0.82[ASN][1000 genomes] |
| rs7006857 | 0.85[ASN][1000 genomes] |
| rs7010627 | 0.85[ASN][1000 genomes] |
| rs7017414 | 0.84[ASN][1000 genomes] |
| rs7018045 | 0.82[ASN][1000 genomes] |
| rs7018175 | 0.82[ASN][1000 genomes] |
| rs7813851 | 0.87[ASN][1000 genomes] |
| rs7828783 | 0.87[ASN][1000 genomes] |
| rs7829040 | 0.80[ASN][1000 genomes] |
| rs7829146 | 0.80[ASN][1000 genomes] |
| rs7845914 | 0.88[ASN][1000 genomes] |
| rs7846624 | 0.87[ASN][1000 genomes] |
| rs9297641 | 0.85[ASN][1000 genomes] |
| rs970450 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831445 | chr8:122336877-122509300 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv891427 | chr8:122411349-122472297 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv527877 | chr8:122426082-122472297 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv1033501 | chr8:122436332-122758651 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:122456200-122466200 | Weak transcription | Fetal Muscle Leg | muscle |
