Variant report

Variant	rs35334499
Chromosome Location	chr3:145269150-145269151
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513261	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13094221	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13098849	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16856953	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1852583	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1879980	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2177286	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2204207	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35175716	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35233647	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4619746	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4681246	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57907704	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs59911926	0.80[AMR][1000 genomes]
rs73158830	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73158834	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9917711	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1839695	chr3:145225110-145324049	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145264800-145274200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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