Variant report

Variant	rs35337885
Chromosome Location	chr11:65600872-65600873
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr11:65600553-65601657	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr11:65600708-65601737	SK-N-SH	brain:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
3	POLR2A	chr11:65600815-65601606	SK-N-SH	brain:	n/a	n/a
4	E2F6	chr11:65600516-65601807	H1-hESC	embryonic stem cell:	n/a	chr11:65601066-65601081 chr11:65601068-65601076 chr11:65601065-65601076 chr11:65601087-65601096 chr11:65601069-65601076 chr11:65601068-65601077 chr11:65601065-65601076 chr11:65601065-65601076 chr11:65601066-65601077 chr11:65601067-65601077
5	MXI1	chr11:65600246-65602155	IMR90	lung:	n/a	n/a
6	ELF1	chr11:65600838-65601499	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:65600755-65601250	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:65600675-65601733	GM12892	blood:	n/a	n/a
9	NFYB	chr11:65600808-65601769	K562	blood:	n/a	n/a
10	MAX	chr11:65600609-65601721	H1-hESC	embryonic stem cell:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
11	POLR2A	chr11:65600483-65602602	HUVEC	blood vessel:	n/a	n/a
12	PBX3	chr11:65600803-65601696	SK-N-SH	brain:	n/a	chr11:65601299-65601319
13	ATF3	chr11:65600818-65601292	GM12878	blood:	n/a	n/a
14	MAX	chr11:65600711-65601940	H1-hESC	embryonic stem cell:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
15	POLR2A	chr11:65600602-65601737	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr11:65600595-65601820	SK-N-MC	brain:	n/a	n/a
17	TAF1	chr11:65600745-65601596	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF3	chr11:65600837-65601223	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr11:65600795-65602332	H1-neurons	neurons:	n/a	n/a
20	NRF1	chr11:65600731-65601572	SK-N-SH	brain:	n/a	chr11:65601086-65601095 chr11:65601086-65601097 chr11:65601086-65601100 chr11:65601083-65601097
21	MXI1	chr11:65600344-65602533	SK-N-SH	brain:	n/a	n/a
22	MXI1	chr11:65600840-65601739	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAZ	chr11:65600729-65602192	IMR90	lung:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
24	POLR2A	chr11:65600821-65601136	H1-hESC	embryonic stem cell:	n/a	n/a
25	RUNX3	chr11:65600864-65601987	GM12878	blood:	n/a	n/a
26	MYC	chr11:65600651-65601587	H1-hESC	embryonic stem cell:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
27	POLR2A	chr11:65600834-65601966	Raji	blood:	n/a	n/a
28	E2F6	chr11:65600597-65601696	H1-hESC	embryonic stem cell:	n/a	chr11:65601066-65601081 chr11:65601068-65601076 chr11:65601065-65601076 chr11:65601087-65601096 chr11:65601069-65601076 chr11:65601068-65601077 chr11:65601065-65601076 chr11:65601065-65601076 chr11:65601066-65601077 chr11:65601067-65601077
29	MAX	chr11:65600781-65601758	SK-N-SH	brain:	n/a	chr11:65601101-65601111 chr11:65601101-65601110 chr11:65601101-65601110 chr11:65601102-65601109
30	POLR2A	chr11:65600460-65601642	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr11:65600821-65601129	H1-hESC	embryonic stem cell:	n/a	n/a
32	USF1	chr11:65600854-65601518	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr11:65600766-65602175	H1-neurons	neurons:	n/a	n/a
34	ELF1	chr11:65600638-65601738	GM12878	blood:	n/a	chr11:65601505-65601517
35	MTA3	chr11:65600398-65602155	GM12878	blood:	n/a	n/a
36	SP2	chr11:65600865-65601588	H1-hESC	embryonic stem cell:	n/a	chr11:65601297-65601320

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65600846-65600896	HCF	heart:	n/a
2	chr11:65600846-65600896	HRCEpiC	kidney:	n/a
3	chr11:65600846-65600896	HL-60	blood:	n/a
4	chr11:65600846-65600896	BJ	skin:	n/a
5	chr11:65600846-65600896	GM19239	blood:	n/a
6	chr11:65600846-65600896	SK-N-MC	brain:	n/a
7	chr11:65600846-65600896	SKMC	muscle:	n/a
8	chr11:65600846-65600896	AG04450	lung:	fetal
9	chr11:65600846-65600896	T-47D	breast:	n/a
10	chr11:65600846-65600896	GM06990	blood:	n/a
11	chr11:65600846-65600896	HIPEpiC	eye:	n/a
12	chr11:65600846-65600896	PrEC	prostate:	n/a
13	chr11:65600846-65600896	ProgFib	skin:	n/a
14	chr11:65600846-65600896	MCF10A-Er-Src	breast:	n/a
15	chr11:65600846-65600896	HMEC	breast:	n/a
16	chr11:65600846-65600896	PFSK-1	brain:	n/a
17	chr11:65600846-65600896	NB4	blood:	n/a
18	chr11:65600846-65600896	HepG2	liver:	n/a
19	chr11:65600846-65600896	GM12891	blood:	n/a
20	chr11:65600846-65600896	HCPEpiC	choroid plexus:	n/a
21	chr11:65600846-65600896	HCM	heart:	n/a
22	chr11:65600846-65600896	HRE	kidney:	n/a
23	chr11:65600846-65600896	PANC-1	pancreas:	n/a
24	chr11:65600846-65600896	HPAEpiC	pulmonary alveolar:	n/a
25	chr11:65600846-65600896	NH-A	brain:	n/a
26	chr11:65600846-65600896	ovcar-3	ovarian:	n/a
27	chr11:65600846-65600896	HEK293	kidney:	embryo
28	chr11:65600846-65600896	MCF-7	breast:	n/a
29	chr11:65600846-65600896	ECC-1	luminal epithelium:	n/a
30	chr11:65600846-65600896	NT2-D1	testis:	n/a
31	chr11:65600846-65600896	AoSMC	blood vessel:	n/a
32	chr11:65600846-65600896	Caco-2	colon:	n/a
33	chr11:65600846-65600896	SK-N-SH	brain:	n/a
34	chr11:65600846-65600896	Hepatocyte	liver:	n/a
35	chr11:65600846-65600896	K562	blood:	n/a
36	chr11:65600846-65600896	NHDF-neo	bronchial:	n/a
37	chr11:65600846-65600896	AG04449	skin:	fetal
38	chr11:65600846-65600896	HCT-116	colon:	n/a
39	chr11:65600846-65600896	CMK	blood:	n/a
40	chr11:65600846-65600896	AG09309	skin:	n/a
41	chr11:65600846-65600896	RPTEC	kidney:	n/a
42	chr11:65600846-65600896	HRPEpiC	eye:	n/a
43	chr11:65600846-65600896	LNCaP	prostate:	n/a
44	chr11:65600846-65600896	GM12892	blood:	n/a
45	chr11:65600846-65600896	SK-N-SH_RA	brain:	n/a
46	chr11:65600846-65600896	HEEpiC	esophagus:	n/a
47	chr11:65600846-65600896	H1-hESC	embryonic stem cell:	embryo
48	chr11:65600846-65600896	GM12878	blood:	n/a
49	chr11:65600846-65600896	Jurkat	blood:	n/a
50	chr11:65600846-65600896	HAEpiC	amniotic membrane:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65599682..65601863-chr11:65818746..65820444,2	K562	blood:

Variant related genes	Relation type
CFL1	TF binding region
SNX32	TF binding region
SNX32	CpG island
CFL1	CpG island
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	esv3328198	chr11:65600476-65603674	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3364341	chr11:65600476-65603674	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65600200-65601200	Flanking Active TSS	Dnd41	blood
2	chr11:65600200-65601600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:65600200-65601600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:65600200-65601800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr11:65600200-65602600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:65600400-65601000	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr11:65600400-65601000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr11:65600400-65601000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr11:65600400-65601000	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr11:65600400-65601000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr11:65600400-65601000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr11:65600400-65601000	Flanking Active TSS	Fetal Stomach	stomach
13	chr11:65600400-65601200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr11:65600400-65601200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:65600400-65601600	Active TSS	Brain Cingulate Gyrus	brain
16	chr11:65600400-65601600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:65600400-65601600	Active TSS	Brain Substantia Nigra	brain
18	chr11:65600400-65601600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:65600400-65601600	Active TSS	Fetal Kidney	kidney
20	chr11:65600400-65601600	Active TSS	Fetal Lung	lung
21	chr11:65600400-65601800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:65600400-65601800	Active TSS	Brain Hippocampus Middle	brain
23	chr11:65600400-65601800	Flanking Active TSS	Right Ventricle	heart
24	chr11:65600400-65602000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr11:65600400-65602200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr11:65600400-65602200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:65600400-65602400	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr11:65600400-65602400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr11:65600600-65601000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:65600600-65601000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr11:65600600-65601000	Flanking Active TSS	Fetal Muscle Trunk	muscle
32	chr11:65600600-65601000	Active TSS	Placenta Amnion	Placenta Amnion
33	chr11:65600600-65601000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr11:65600600-65601000	Flanking Active TSS	Thymus	Thymus
35	chr11:65600600-65601000	Flanking Active TSS	GM12878-XiMat	blood
36	chr11:65600600-65601000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
37	chr11:65600600-65601000	Flanking Bivalent TSS/Enh	Osteobl	bone
38	chr11:65600600-65601200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:65600600-65601200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:65600600-65601200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:65600600-65601200	Flanking Active TSS	Spleen	Spleen
42	chr11:65600600-65601400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:65600600-65601400	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr11:65600600-65601400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
45	chr11:65600600-65601400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:65600600-65601400	Active TSS	Esophagus	oesophagus
47	chr11:65600600-65601400	Bivalent/Poised TSS	Placenta	Placenta
48	chr11:65600600-65601400	Bivalent/Poised TSS	NHLF	lung
49	chr11:65600600-65601600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:65600600-65601600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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