Variant report

Variant	rs35339652
Chromosome Location	chr5:73982378-73982379
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:73979598..73982392-chr5:73983812..73990818,9	MCF-7	breast:
2	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:
3	chr5:73979909..73982593-chr5:73987219..73990536,5	MCF-7	breast:
4	chr5:73981038..73983852-chr5:73999852..74002635,2	MCF-7	breast:
5	chr5:73980885..73983030-chr5:74062980..74064496,2	MCF-7	breast:
6	chr5:73981324..73983563-chr5:74077397..74079724,2	K562	blood:
7	chr5:73981661..73984902-chr5:74226605..74228461,3	K562	blood:
8	chr5:73980953..73983731-chr5:74012002..74014571,3	MCF-7	breast:
9	chr5:73979743..73983565-chr5:73984545..73990071,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164347	Chromatin interaction
ENSG00000239517	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000164346	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13844	chr5:73979961-73993853	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv598652	chr5:73980182-73992881	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv934214	chr5:73981349-73993050	Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv933165	chr5:73981599-73993050	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73980600-73982400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:73980600-73982400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr5:73980600-73982800	Active TSS	Fetal Kidney	kidney
4	chr5:73980800-73982600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:73980800-73982800	Active TSS	Fetal Intestine Large	intestine
6	chr5:73981200-73982400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:73981200-73982400	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr5:73981200-73982400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr5:73981200-73982400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr5:73981200-73982600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr5:73981200-73982600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:73981400-73982400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr5:73981400-73982400	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr5:73981400-73982400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr5:73981400-73982400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr5:73981400-73982600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr5:73981400-73982600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:73981400-73982600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr5:73981400-73982600	Flanking Active TSS	NH-A	brain
20	chr5:73981400-73982800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr5:73981400-73983000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr5:73981400-73983200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr5:73981400-73983200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:73981400-73983200	Flanking Active TSS	Dnd41	blood
25	chr5:73981600-73982400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr5:73981600-73982400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr5:73981600-73982400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:73981600-73982400	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr5:73981600-73982600	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr5:73981600-73982600	Flanking Active TSS	HUVEC	blood vessel
31	chr5:73981600-73983000	Enhancers	Fetal Heart	heart
32	chr5:73981600-73983000	Flanking Active TSS	Osteobl	bone
33	chr5:73981600-73983400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:73981600-73983400	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr5:73981600-73983400	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr5:73981600-73983400	Flanking Active TSS	Hela-S3	cervix
37	chr5:73981800-73982400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:73981800-73982400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:73981800-73982400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:73981800-73982400	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr5:73981800-73982400	Flanking Active TSS	Colonic Mucosa	Colon
42	chr5:73981800-73982400	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr5:73981800-73982400	Flanking Active TSS	Right Ventricle	heart
44	chr5:73981800-73982400	Active TSS	HSMMtube	muscle
45	chr5:73981800-73982600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr5:73981800-73982600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:73981800-73982600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:73981800-73982600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr5:73981800-73982800	Flanking Active TSS	Brain Angular Gyrus	brain
50	chr5:73981800-73982800	Flanking Active TSS	HMEC	breast

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