Variant report

Variant	rs35340830
Chromosome Location	chr6:11722265-11722266
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11722035..11725191-chr6:11730801..11735491,4	K562	blood:
2	chr6:11720548..11722758-chr6:11726915..11729775,2	MCF-7	breast:
3	chr6:11716333..11720276-chr6:11720959..11723559,3	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2013368	0.80[ASN][1000 genomes]
rs2076184	0.82[ASN][1000 genomes]
rs210901	0.82[ASN][1000 genomes]
rs210902	0.82[ASN][1000 genomes]
rs210904	0.91[ASN][1000 genomes]
rs210906	0.82[ASN][1000 genomes]
rs2235420	0.80[ASN][1000 genomes]
rs4713831	0.82[ASN][1000 genomes]
rs72819641	0.80[ASN][1000 genomes]
rs926364	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv462637	chr6:11710554-11733777	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600990	chr6:11710554-11733777	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35340830	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11710800-11731000	Weak transcription	Gastric	stomach
2	chr6:11711200-11731000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:11711600-11731800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:11713400-11723000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:11713400-11724600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:11713600-11727600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:11713800-11723200	Weak transcription	HSMMtube	muscle
8	chr6:11714600-11731600	Weak transcription	Small Intestine	intestine
9	chr6:11715200-11728000	Weak transcription	Fetal Thymus	thymus
10	chr6:11715800-11723000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:11716400-11723000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:11716600-11723000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:11717200-11722600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:11718400-11725400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr6:11719400-11723600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
17	chr6:11719600-11732400	Weak transcription	NHEK	skin
18	chr6:11719800-11722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:11720000-11722600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:11721000-11723200	Strong transcription	HMEC	breast
21	chr6:11721400-11724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:11721600-11722400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:11721600-11722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:11721600-11722600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:11721600-11722600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:11721600-11723000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:11721600-11723200	Weak transcription	HSMM	muscle
28	chr6:11721800-11722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:11721800-11723000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr6:11721800-11723400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:11722200-11722400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:11722200-11723000	Enhancers	Primary T helper cells PMA-I stimulated	--

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