Variant report

Variant	rs35341157
Chromosome Location	chr7:2840833-2840834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2598535..2600621-chr7:2839560..2841843,2	MCF-7	breast:
2	chr7:2834982..2836985-chr7:2838471..2841114,3	MCF-7	breast:
3	chr7:2838542..2841510-chr7:2843675..2845614,3	K562	blood:

Variant related genes	Relation type
ENSG00000106012	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11974165	1.00[EUR][1000 genomes]
rs17132636	1.00[ASN][1000 genomes]
rs17132643	1.00[ASN][1000 genomes]
rs17132663	1.00[ASN][1000 genomes]
rs36113116	1.00[ASN][1000 genomes]
rs6461600	1.00[ASN][1000 genomes]
rs6962049	1.00[ASN][1000 genomes]
rs7783796	1.00[EUR][1000 genomes]
rs7811164	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2810600-2842600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:2822600-2841000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:2824000-2842800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:2829800-2841200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:2829800-2841400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:2830000-2841200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:2830200-2842800	Weak transcription	Colonic Mucosa	Colon
8	chr7:2832000-2841400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:2832800-2841000	Weak transcription	NHEK	skin
10	chr7:2832800-2842600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:2833000-2842400	Weak transcription	Spleen	Spleen
12	chr7:2833200-2842400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:2834200-2841000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:2834200-2841200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:2834600-2841000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:2834600-2841400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:2834600-2842400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:2834600-2847800	Weak transcription	Liver	Liver
19	chr7:2834800-2841000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:2834800-2841000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:2834800-2841000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:2834800-2841400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:2834800-2842200	Weak transcription	Brain Germinal Matrix	brain
24	chr7:2834800-2842400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:2835000-2841000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:2835000-2841000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:2835000-2841200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr7:2835000-2842200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:2835200-2841000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:2835200-2841000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:2835200-2842400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:2836400-2841200	Enhancers	Primary B cells from peripheral blood	blood
33	chr7:2836600-2842400	Weak transcription	Fetal Kidney	kidney
34	chr7:2836600-2844600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:2837000-2841000	Weak transcription	HUVEC	blood vessel
36	chr7:2837000-2841800	Weak transcription	Brain Angular Gyrus	brain
37	chr7:2837000-2842400	Weak transcription	Psoas Muscle	Psoas
38	chr7:2837000-2850600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:2837200-2841200	Enhancers	A549	lung
40	chr7:2837600-2841000	Weak transcription	NHDF-Ad	bronchial
41	chr7:2837600-2841200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:2837600-2842200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:2837800-2841000	Weak transcription	Brain Anterior Caudate	brain
44	chr7:2838000-2842800	Enhancers	Primary hematopoietic stem cells	blood
45	chr7:2838600-2842200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:2838600-2844200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr7:2838800-2841600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr7:2839000-2841200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:2839000-2841400	Enhancers	GM12878-XiMat	blood
50	chr7:2839000-2842200	Enhancers	Fetal Lung	lung

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