Variant report

Variant	rs35345272
Chromosome Location	chr3:120398822-120398823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:56735335..56738268-chr3:120396094..120398851,2	MCF-7	breast:
2	chr3:120396369..120399119-chr3:120400893..120402859,2	K562	blood:
3	chr3:120396266..120398930-chr3:120408649..120411497,2	MCF-7	breast:
4	chr3:120392048..120394831-chr3:120397080..120399083,3	K562	blood:

Variant related genes	Relation type
ENSG00000113924	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17140404	1.00[ASN][1000 genomes]
rs17140408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3373301	chr3:120273762-120421260	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv877377	chr3:120287683-120426750	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	esv3464294	chr3:120303062-120420810	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	esv3464295	chr3:120303062-120420810	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv829699	chr3:120308332-120484695	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
11	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv877378	chr3:120381530-120606438	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120346400-120402200	Weak transcription	Gastric	stomach
2	chr3:120391800-120400000	Weak transcription	Colonic Mucosa	Colon
3	chr3:120395400-120399200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:120396600-120399600	Enhancers	Stomach Mucosa	stomach
5	chr3:120396600-120399800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:120396600-120399800	Enhancers	Fetal Intestine Small	intestine
7	chr3:120396600-120400000	Enhancers	Fetal Intestine Large	intestine
8	chr3:120396600-120401200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:120397400-120399400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:120397400-120400800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:120397600-120399600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:120397600-120399600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:120397600-120400200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:120397600-120400600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:120397600-120401400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:120397600-120401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:120397600-120402200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:120397600-120407200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:120397600-120421600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:120397800-120399000	Flanking Active TSS	A549	lung
21	chr3:120397800-120399600	Active TSS	HepG2	liver
22	chr3:120397800-120400400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:120397800-120401200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:120397800-120401400	Weak transcription	Small Intestine	intestine
25	chr3:120397800-120410600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:120397800-120410600	Weak transcription	Brain Angular Gyrus	brain
27	chr3:120397800-120412200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:120397800-120415800	Weak transcription	Ovary	ovary
29	chr3:120397800-120420600	Weak transcription	Primary B cells from cord blood	blood
30	chr3:120397800-120421800	Weak transcription	Aorta	Aorta
31	chr3:120397800-120424800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:120398000-120399200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr3:120398000-120405200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:120398200-120399000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:120398200-120399400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:120398200-120400000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:120398200-120400000	Enhancers	Hela-S3	cervix
38	chr3:120398200-120401000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:120398200-120401000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:120398200-120401200	Active TSS	Liver	Liver
41	chr3:120398200-120405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:120398200-120407000	Weak transcription	GM12878-XiMat	blood
43	chr3:120398200-120408000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:120398200-120408200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:120398200-120408200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:120398200-120410400	Weak transcription	Brain Substantia Nigra	brain
47	chr3:120398200-120412200	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:120398200-120412200	Weak transcription	HMEC	breast
49	chr3:120398200-120415200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr3:120398200-120423200	Weak transcription	Psoas Muscle	Psoas

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