Variant report

Variant	rs35347413
Chromosome Location	chr2:210275284-210275285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210269120..210271188-chr2:210274564..210276195,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12986446	0.83[AMR][1000 genomes]
rs12998272	0.93[EUR][1000 genomes]
rs12999670	0.93[EUR][1000 genomes]
rs13002012	0.80[EUR][1000 genomes]
rs13007765	0.80[EUR][1000 genomes]
rs13012322	0.81[EUR][1000 genomes]
rs13017472	0.83[AMR][1000 genomes]
rs13022552	0.93[EUR][1000 genomes]
rs13023112	0.93[EUR][1000 genomes]
rs13032935	0.81[EUR][1000 genomes]
rs13035684	0.86[AFR][1000 genomes]
rs13036037	0.80[EUR][1000 genomes]
rs16842834	0.87[EUR][1000 genomes]
rs34445752	0.81[EUR][1000 genomes]
rs34565674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34578885	0.93[EUR][1000 genomes]
rs34636750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35216876	0.81[EUR][1000 genomes]
rs35289769	0.83[AMR][1000 genomes]
rs35358788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35634353	0.83[AMR][1000 genomes]
rs35645004	0.83[AMR][1000 genomes]
rs35791583	0.83[AMR][1000 genomes]
rs35955770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35978314	1.00[EUR][1000 genomes]
rs59984943	0.93[EUR][1000 genomes]
rs67654534	0.83[AMR][1000 genomes]
rs67917650	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210275200-210275800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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