Variant report

Variant	rs35349461
Chromosome Location	chr2:39088786-39088787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39086851..39091387-chr2:39094171..39096771,4	K562	blood:
2	chr2:39088675..39091170-chr2:39093044..39095216,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163214	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61736780	1.00[ASN][1000 genomes]
rs72797376	1.00[ASN][1000 genomes]
rs72797386	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv2692	chr2:39065768-39111871	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39038800-39095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:39038800-39102200	Weak transcription	Gastric	stomach
3	chr2:39039000-39090000	Weak transcription	Esophagus	oesophagus
4	chr2:39039000-39101200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:39039000-39102000	Weak transcription	Colonic Mucosa	Colon
6	chr2:39067200-39090200	Weak transcription	Stomach Mucosa	stomach
7	chr2:39068400-39090600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:39072200-39095400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:39072400-39089200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:39072600-39090800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:39073000-39091200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:39073600-39090200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:39075200-39090800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:39076000-39090600	Strong transcription	Brain Germinal Matrix	brain
15	chr2:39076200-39090600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:39076400-39090800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:39076600-39090800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:39078000-39090800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:39078200-39091200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:39078400-39090600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:39078800-39090600	Strong transcription	Osteobl	bone
22	chr2:39079400-39090800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr2:39079600-39090400	Strong transcription	Fetal Thymus	thymus
24	chr2:39079600-39090800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr2:39079600-39090800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:39079600-39090800	Strong transcription	Fetal Brain Female	brain
27	chr2:39079800-39089600	Strong transcription	Fetal Stomach	stomach
28	chr2:39079800-39090600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:39079800-39090600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:39079800-39090600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:39079800-39090600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:39079800-39090600	Strong transcription	Brain Anterior Caudate	brain
33	chr2:39079800-39090600	Strong transcription	Fetal Muscle Leg	muscle
34	chr2:39079800-39090600	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr2:39079800-39090800	Strong transcription	Adipose Nuclei	Adipose
36	chr2:39079800-39091000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr2:39079800-39091000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:39079800-39091200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:39080000-39090800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:39080000-39090800	Strong transcription	Brain Hippocampus Middle	brain
41	chr2:39080000-39090800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:39080000-39092000	Strong transcription	Primary T cells from cord blood	blood
43	chr2:39080000-39102200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:39080200-39089800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:39080200-39090200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr2:39081200-39102200	Weak transcription	Right Ventricle	heart
47	chr2:39081200-39102200	Weak transcription	Spleen	Spleen
48	chr2:39081200-39102400	Weak transcription	Pancreas	Pancrea
49	chr2:39081400-39089400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:39081600-39093400	Weak transcription	Aorta	Aorta

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