Variant report

Variant	rs35349900
Chromosome Location	chr6:36911636-36911637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12664695	0.82[EUR][1000 genomes]
rs13214150	0.90[EUR][1000 genomes]
rs16889316	0.89[EUR][1000 genomes]
rs34165286	0.87[EUR][1000 genomes]
rs4711475	0.85[ASN][1000 genomes]
rs4714025	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56322497	0.89[EUR][1000 genomes]
rs66570061	0.89[EUR][1000 genomes]
rs66706526	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs68028411	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs697747	0.89[EUR][1000 genomes]
rs697748	0.89[EUR][1000 genomes]
rs707998	0.89[EUR][1000 genomes]
rs707999	0.89[EUR][1000 genomes]
rs831507	0.89[EUR][1000 genomes]
rs9470444	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
6	chr6:36908000-36915200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:36908400-36912200	Weak transcription	Fetal Heart	heart
8	chr6:36908800-36912000	Weak transcription	Fetal Thymus	thymus
9	chr6:36908800-36914000	Weak transcription	Thymus	Thymus
10	chr6:36910800-36916000	Weak transcription	Hela-S3	cervix
11	chr6:36911200-36912600	Enhancers	Primary B cells from cord blood	blood
12	chr6:36911400-36912800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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