Variant report

Variant	rs35350748
Chromosome Location	chr6:48397534-48397535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12111471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776091	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776450	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603035	chr6:47902243-48700995	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885877	chr6:48117685-48626930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv917050	chr6:48168742-48578496	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830657	chr6:48387714-48566656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48393200-48398800	Enhancers	NHLF	lung
2	chr6:48393800-48398800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:48393800-48399000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:48395000-48399000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:48395200-48398400	Weak transcription	NHDF-Ad	bronchial
6	chr6:48395400-48398200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:48396200-48398400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:48396400-48398600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:48396400-48398800	Enhancers	Hela-S3	cervix
10	chr6:48396400-48398800	Enhancers	Osteobl	bone
11	chr6:48396600-48398600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:48396600-48398600	Enhancers	HSMM	muscle
13	chr6:48396600-48399200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:48396600-48399200	Enhancers	A549	lung
15	chr6:48396600-48399200	Enhancers	HMEC	breast
16	chr6:48396800-48398000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:48396800-48398800	Enhancers	NH-A	brain
18	chr6:48396800-48399000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:48396800-48399000	Enhancers	NHEK	skin
20	chr6:48397000-48398600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:48397000-48398800	Enhancers	HUVEC	blood vessel
22	chr6:48397200-48398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:48397200-48398400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:48397200-48398400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:48397200-48398400	Weak transcription	Fetal Lung	lung

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