Variant report

Variant	rs35350752
Chromosome Location	chr7:39851475-39851476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10951614	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv5708	chr7:39814330-39855535	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39849400-39851800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:39849800-39851800	Enhancers	Placenta	Placenta
3	chr7:39849800-39852000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:39850000-39851600	Enhancers	Fetal Muscle Leg	muscle
5	chr7:39850000-39851800	Enhancers	Fetal Muscle Trunk	muscle
6	chr7:39850400-39851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:39850400-39851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:39850600-39853600	Weak transcription	Right Atrium	heart
9	chr7:39850800-39851600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:39851000-39855200	Weak transcription	Left Ventricle	heart
11	chr7:39851200-39852000	Enhancers	HMEC	breast
12	chr7:39851200-39855400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:39851400-39854800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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