Variant report

Variant	rs35351529
Chromosome Location	chr5:79390222-79390223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13167730	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180294	1.00[ASN][1000 genomes]
rs2405136	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv598744	chr5:79388745-79423347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79366200-79392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:79379400-79393200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:79379400-79400600	Weak transcription	Left Ventricle	heart
4	chr5:79382000-79393200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:79385800-79393000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:79387400-79397000	Enhancers	Fetal Thymus	thymus
7	chr5:79388000-79405000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:79388400-79390400	Weak transcription	Right Atrium	heart
9	chr5:79388400-79393400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:79388600-79390400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:79388600-79395600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:79388800-79393000	Weak transcription	Thymus	Thymus
13	chr5:79389000-79390800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:79389200-79390800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:79389200-79390800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:79389200-79391000	Enhancers	Fetal Kidney	kidney
17	chr5:79389400-79390400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:79389400-79390400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:79389400-79390600	Weak transcription	Placenta	Placenta
20	chr5:79389400-79391400	Enhancers	Fetal Heart	heart
21	chr5:79389400-79412200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:79389600-79390400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:79389600-79390400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:79389600-79392400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:79389600-79398400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:79389800-79390400	Enhancers	Stomach Smooth Muscle	stomach
27	chr5:79389800-79390600	Enhancers	K562	blood
28	chr5:79389800-79390800	Enhancers	Fetal Stomach	stomach
29	chr5:79389800-79392000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:79389800-79393200	Weak transcription	Primary T cells from cord blood	blood
31	chr5:79389800-79393400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr5:79389800-79411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:79390000-79390400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:79390000-79390400	Enhancers	Ovary	ovary
35	chr5:79390000-79390600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr5:79390000-79393000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr5:79390000-79393000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:79390000-79401200	Weak transcription	Pancreas	Pancrea
39	chr5:79390200-79390800	Enhancers	Right Ventricle	heart
40	chr5:79390200-79391600	Enhancers	HepG2	liver
41	chr5:79390200-79392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:79390200-79393000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr5:79390200-79393000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr5:79390200-79393200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:79390200-79393400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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