Variant report

Variant	rs35352787
Chromosome Location	chr18:29356385-29356386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10853414	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11081713	0.82[EUR][1000 genomes]
rs12454376	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12456474	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12956177	0.98[ASN][1000 genomes]
rs1466503	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16962424	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718318	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1809456	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1809457	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1809458	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1809459	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2200110	0.82[EUR][1000 genomes]
rs35327804	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55786342	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56033899	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56352737	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7233839	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29354000-29357600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:29354200-29357600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:29354800-29356600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:29355200-29357800	Weak transcription	Liver	Liver
5	chr18:29355400-29356800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr18:29355400-29357400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:29355600-29356800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:29355800-29356400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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