Variant report

Variant	rs35353818
Chromosome Location	chr4:55251122-55251123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1004564	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133321	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1156181	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11732321	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1492763	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562058	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17747403	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34194368	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55249800-55251200	Enhancers	Fetal Muscle Leg	muscle
2	chr4:55250200-55251400	Enhancers	Fetal Stomach	stomach
3	chr4:55250400-55251200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:55250800-55251400	Enhancers	Brain Cingulate Gyrus	brain
5	chr4:55250800-55251600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:55250800-55251600	Enhancers	Brain Hippocampus Middle	brain
7	chr4:55251000-55251200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:55251000-55251400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:55251000-55251600	Enhancers	Brain Substantia Nigra	brain
10	chr4:55251000-55251800	Enhancers	Brain Anterior Caudate	brain
11	chr4:55251000-55251800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:55251000-55252200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:55251000-55252600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:55251000-55253000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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