Variant report

Variant	rs35354480
Chromosome Location	chr12:103508026-103508027
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr12:103507988-103508893	GM12878	blood:	n/a	n/a
2	BCLAF1	chr12:103508021-103508800	GM12878	blood:	n/a	chr12:103508657-103508666 chr12:103508656-103508665
3	TCF12	chr12:103508023-103508478	GM12878	blood:	n/a	n/a
4	STAT5A	chr12:103508019-103508828	GM12878	blood:	n/a	n/a
5	IRF4	chr12:103507898-103508898	GM12878	blood:	n/a	n/a
6	ATF2	chr12:103507916-103508908	GM12878	blood:	n/a	n/a
7	RCOR1	chr12:103507834-103508934	GM12878	blood:	n/a	n/a
8	IRF4	chr12:103507910-103508863	GM12878	blood:	n/a	n/a
9	BCL11A	chr12:103508026-103508941	GM12878	blood:	n/a	chr12:103508657-103508666 chr12:103508656-103508665
10	PAX5	chr12:103507998-103508490	GM12878	blood:	n/a	n/a
11	EBF1	chr12:103507350-103508995	GM12878	blood:	n/a	chr12:103508293-103508304
12	EBF1	chr12:103507968-103508911	GM12878	blood:	n/a	chr12:103508293-103508304
13	CUX1	chr12:103507778-103508861	GM12878	blood:	n/a	n/a
14	NFATC1	chr12:103507939-103508834	GM12878	blood:	n/a	n/a
15	NFIC	chr12:103507913-103509164	GM12878	blood:	n/a	n/a
16	EBF1	chr12:103507946-103508855	GM12878	blood:	n/a	chr12:103508293-103508304
17	MEF2C	chr12:103508010-103509035	GM12878	blood:	n/a	chr12:103509019-103509027 chr12:103508946-103508954 chr12:103508657-103508665
18	CEBPB	chr12:103507916-103508641	GM12878	blood:	n/a	n/a
19	FOXM1	chr12:103507961-103508700	GM12878	blood:	n/a	n/a
20	ATF2	chr12:103507953-103508895	GM12878	blood:	n/a	n/a
21	SPI1	chr12:103507708-103508909	GM12878	blood:	n/a	n/a
22	PAX5	chr12:103507995-103508853	GM12878	blood:	n/a	n/a
23	BCLAF1	chr12:103507971-103508884	GM12878	blood:	n/a	chr12:103508657-103508666 chr12:103508656-103508665
24	SPI1	chr12:103508021-103508629	GM12891	blood:	n/a	n/a
25	PML	chr12:103507960-103509016	GM12878	blood:	n/a	chr12:103508655-103508664
26	EP300	chr12:103507762-103508895	GM12878	blood:	n/a	chr12:103508657-103508666
27	MAZ	chr12:103507827-103508729	GM12878	blood:	n/a	chr12:103508657-103508666
28	RFX5	chr12:103508026-103508929	GM12878	blood:	n/a	chr12:103508723-103508731
29	MTA3	chr12:103507899-103508918	GM12878	blood:	n/a	n/a
30	RUNX3	chr12:103507930-103508874	GM12878	blood:	n/a	n/a
31	RUNX3	chr12:103507874-103508891	GM12878	blood:	n/a	n/a
32	EP300	chr12:103507981-103508873	GM12878	blood:	n/a	chr12:103508657-103508666
33	MTA3	chr12:103507916-103508923	GM12878	blood:	n/a	n/a
34	POU2F2	chr12:103507933-103508915	GM12878	blood:	n/a	n/a
35	NFIC	chr12:103507928-103508859	GM12878	blood:	n/a	n/a
36	FOXM1	chr12:103507942-103509010	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RNU7-184P	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv1824379	chr12:103501562-103549931	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103508000-103508800	Flanking Active TSS	GM12878-XiMat	blood
2	chr12:103508000-103509000	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:103508000-103509200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr12:103508000-103509200	Enhancers	Fetal Intestine Large	intestine
5	chr12:103508000-103509400	Enhancers	Fetal Intestine Small	intestine

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