Variant report

Variant	rs35355475
Chromosome Location	chr12:49190365-49190366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49189777..49191813-chr12:49191955..49193959,2	MCF-7	breast:
2	chr12:49147197..49147937-chr12:49189254..49190377,13	K562	blood:
3	chr12:49146911..49149317-chr12:49187384..49190863,4	MCF-7	breast:
4	chr12:49180476..49185685-chr12:49186526..49194648,14	MCF-7	breast:
5	chr12:49185219..49191305-chr12:49206326..49211471,6	MCF-7	breast:
6	chr12:49187381..49192207-chr12:49206583..49210569,9	MCF-7	breast:
7	chr12:49189404..49190565-chr12:49208098..49209078,7	MCF-7	breast:
8	chr12:49189229..49191838-chr12:49193085..49196129,3	MCF-7	breast:
9	chr12:49174311..49177281-chr12:49188936..49191839,3	MCF-7	breast:
10	chr12:48935860..48936459-chr12:49189641..49190580,2	MCF-7	breast:
11	chr12:49180246..49182305-chr12:49186657..49190531,5	MCF-7	breast:
12	chr12:49189571..49192357-chr12:49210658..49214182,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000257660	Chromatin interaction
ENSG00000167535	Chromatin interaction
ENSG00000271547	Chromatin interaction
ENSG00000174233	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11168742	0.81[EUR][1000 genomes]
rs12297364	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303625	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7307701	0.94[EUR][1000 genomes]
rs73298167	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975385	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826363	chr12:49177227-49250989	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49184200-49193800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:49184200-49194400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:49184200-49198800	Weak transcription	NHLF	lung
4	chr12:49184400-49194000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:49188400-49190400	Enhancers	Fetal Intestine Small	intestine
6	chr12:49188400-49191200	Enhancers	Fetal Intestine Large	intestine
7	chr12:49188600-49191000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:49189600-49190400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:49189600-49191000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:49189800-49190400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr12:49189800-49191200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr12:49190000-49190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:49190000-49190400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:49190000-49190400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr12:49190000-49190800	Enhancers	Duodenum Mucosa	Duodenum
16	chr12:49190000-49191000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:49190000-49197400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:49190000-49197400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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