Variant report

Variant	rs35358794
Chromosome Location	chr1:193069869-193069870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193020543..193046917-chr1:193069266..193098746,125	K562	blood:

Variant related genes	Relation type
ENSG00000238754	Chromatin interaction
ENSG00000116750	Chromatin interaction
ENSG00000116747	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12531	1.00[EUR][1000 genomes]
rs34147192	1.00[EUR][1000 genomes]
rs34353394	1.00[EUR][1000 genomes]
rs34839876	0.85[AFR][1000 genomes]
rs35057393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35070966	1.00[EUR][1000 genomes]
rs35241972	1.00[EUR][1000 genomes]
rs35995477	1.00[EUR][1000 genomes]
rs41306225	1.00[EUR][1000 genomes]
rs41310923	1.00[EUR][1000 genomes]
rs56055376	1.00[EUR][1000 genomes]
rs56300484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1002094	chr1:192968080-193084045	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193045200-193070200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:193046800-193070400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:193047400-193071400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:193048200-193072600	Weak transcription	Stomach Mucosa	stomach
5	chr1:193048600-193073000	Weak transcription	Fetal Brain Male	brain
6	chr1:193048800-193070000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:193050800-193072600	Weak transcription	Fetal Heart	heart
8	chr1:193052800-193072600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:193053000-193072200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:193053000-193073200	Weak transcription	Esophagus	oesophagus
11	chr1:193053400-193072000	Weak transcription	Psoas Muscle	Psoas
12	chr1:193053600-193072600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:193054200-193072600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:193054200-193072600	Weak transcription	Colonic Mucosa	Colon
15	chr1:193054200-193073000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:193054200-193073000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:193054400-193070400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:193054400-193072600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:193054400-193072600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:193054600-193072400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:193054800-193073000	Weak transcription	Fetal Thymus	thymus
22	chr1:193055600-193071600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:193056200-193073200	Weak transcription	Brain Germinal Matrix	brain
24	chr1:193057800-193070200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:193058200-193070000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:193058800-193070000	Strong transcription	Osteobl	bone
27	chr1:193059200-193070200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:193059200-193070200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:193060000-193070200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:193060600-193072200	Weak transcription	HMEC	breast
31	chr1:193061200-193071800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:193061400-193070000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:193061400-193070000	Strong transcription	Liver	Liver
34	chr1:193061400-193070000	Strong transcription	Fetal Intestine Large	intestine
35	chr1:193061600-193070000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:193061600-193070000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr1:193061800-193070000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:193062000-193070200	Strong transcription	NHDF-Ad	bronchial
39	chr1:193062000-193070400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:193062200-193070000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:193062200-193070000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:193062400-193070000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr1:193062400-193070000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr1:193062400-193070200	Strong transcription	Adipose Nuclei	Adipose
45	chr1:193062600-193070000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr1:193062600-193070000	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:193063200-193070000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:193063200-193070000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr1:193063200-193072200	Strong transcription	HSMM	muscle
50	chr1:193063400-193070000	Strong transcription	Primary B cells from peripheral blood	blood

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