Variant report

Variant	rs35361326
Chromosome Location	chr7:106837680-106837681
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:106837585-106837713	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:106836928-106846395	K562	blood:	n/a	n/a
3	POLR2A	chr7:106837185-106839347	GM12878	blood:	n/a	n/a
4	POLR2A	chr7:106836977-106837985	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr7:106837670-106838183	K562	blood:	n/a	n/a
6	POLR2A	chr7:106836888-106837831	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr7:106836961-106837904	K562	blood:	n/a	n/a
8	POLR2A	chr7:106837298-106837801	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr7:106837141-106838501	A549	lung:	n/a	n/a
10	POLR2A	chr7:106837111-106837879	HepG2	liver:	n/a	n/a
11	GATA3	chr7:106837416-106838009	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106829518..106831320-chr7:106836010..106838979,2	K562	blood:

Variant related genes	Relation type
ENSG00000272072	TF binding region
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17424561	1.00[AFR][1000 genomes]
rs17425867	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9649298	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106815200-106849400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:106816000-106843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:106817400-106851400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr7:106819600-106851800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr7:106819800-106846600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:106819800-106851600	Strong transcription	Dnd41	blood
7	chr7:106820000-106851200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:106820000-106851600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:106820200-106848400	Strong transcription	Placenta	Placenta
10	chr7:106820200-106851200	Strong transcription	Primary B cells from cord blood	blood
11	chr7:106820200-106851800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:106820200-106851800	Strong transcription	Fetal Thymus	thymus
13	chr7:106820400-106845200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:106820400-106848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:106821000-106840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:106821000-106848400	Strong transcription	Liver	Liver
17	chr7:106821000-106854600	Strong transcription	Primary T cells from cord blood	blood
18	chr7:106821200-106841600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:106821200-106845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:106821200-106846600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr7:106821200-106851800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:106821200-106851800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:106821200-106851800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr7:106821400-106851800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr7:106821600-106851600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:106821600-106851800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:106821800-106839600	Weak transcription	Small Intestine	intestine
28	chr7:106821800-106847800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:106821800-106851400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:106822000-106847400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:106822400-106842000	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:106823000-106851200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:106823800-106849600	Weak transcription	HMEC	breast
34	chr7:106825200-106842200	Strong transcription	Brain Hippocampus Middle	brain
35	chr7:106828600-106843800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:106828600-106849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:106828600-106851800	Strong transcription	Fetal Intestine Large	intestine
38	chr7:106828800-106842000	Strong transcription	Adipose Nuclei	Adipose
39	chr7:106828800-106849800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:106828800-106851200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:106830400-106846600	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:106831400-106844400	Weak transcription	Right Ventricle	heart
43	chr7:106831400-106847800	Weak transcription	Fetal Brain Male	brain
44	chr7:106832000-106852400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr7:106832600-106841600	Weak transcription	Hela-S3	cervix
46	chr7:106832800-106847800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:106833000-106846000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:106833400-106838800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:106833400-106845600	Weak transcription	A549	lung
50	chr7:106833600-106839600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links