Variant report

Variant	rs35364446
Chromosome Location	chr11:16902312-16902313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16901136..16902901-chr11:16914387..16916198,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11824348	1.00[AMR][1000 genomes]
rs12785711	1.00[AMR][1000 genomes]
rs12786886	1.00[AMR][1000 genomes]
rs12787236	1.00[AMR][1000 genomes]
rs12793275	1.00[AMR][1000 genomes]
rs12805659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12806040	1.00[AMR][1000 genomes]
rs34670733	1.00[AMR][1000 genomes]
rs34760218	1.00[AMR][1000 genomes]
rs35449646	1.00[AMR][1000 genomes]
rs35515929	1.00[AMR][1000 genomes]
rs35873274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484734	1.00[AMR][1000 genomes]
rs71484736	1.00[AMR][1000 genomes]
rs71484744	1.00[AMR][1000 genomes]
rs7947201	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:16893400-16902600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:16896600-16902400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:16896600-16902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:16896800-16902600	Weak transcription	HSMMtube	muscle
8	chr11:16898000-16903600	Enhancers	Gastric	stomach
9	chr11:16898400-16908400	Weak transcription	HepG2	liver
10	chr11:16898800-16902400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:16898800-16902400	Weak transcription	Fetal Lung	lung
12	chr11:16898800-16902800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:16899000-16902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:16899000-16902600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:16899200-16903000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:16899200-16903600	Enhancers	Left Ventricle	heart
17	chr11:16899400-16902600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:16899400-16904600	Weak transcription	Placenta	Placenta
19	chr11:16900000-16903600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:16900000-16903600	Enhancers	Pancreas	Pancrea
21	chr11:16900200-16905400	Enhancers	Stomach Mucosa	stomach
22	chr11:16900400-16903400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:16900600-16905800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:16900800-16902600	Enhancers	HMEC	breast
25	chr11:16900800-16902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:16900800-16902800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:16900800-16903400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:16900800-16905800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:16901000-16902600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:16901000-16902600	Genic enhancers	Fetal Intestine Small	intestine
31	chr11:16901000-16903400	Enhancers	Lung	lung
32	chr11:16901000-16903800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:16901200-16902800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:16901200-16902800	Weak transcription	Brain Anterior Caudate	brain
35	chr11:16901200-16904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:16901400-16904400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:16901600-16903600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:16901600-16903600	Enhancers	Ovary	ovary
39	chr11:16901800-16902400	Enhancers	Fetal Heart	heart
40	chr11:16901800-16902800	Weak transcription	Esophagus	oesophagus
41	chr11:16901800-16902800	Weak transcription	Spleen	Spleen
42	chr11:16901800-16903600	Enhancers	Placenta Amnion	Placenta Amnion
43	chr11:16902000-16902800	Enhancers	NHEK	skin
44	chr11:16902000-16905800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:16902200-16902800	Active TSS	Right Atrium	heart
46	chr11:16902200-16903400	Active TSS	Right Ventricle	heart

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