Variant report

Variant	rs35366253
Chromosome Location	chr2:116353885-116353886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1006341	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10205583	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10205952	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1037204	0.81[ASN][1000 genomes]
rs13002945	0.81[ASN][1000 genomes]
rs13003256	0.81[ASN][1000 genomes]
rs13007729	0.81[ASN][1000 genomes]
rs13014914	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448472	0.83[ASN][1000 genomes]
rs17044588	0.81[ASN][1000 genomes]
rs17044593	0.81[ASN][1000 genomes]
rs17044687	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17044697	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17044776	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1868327	0.81[ASN][1000 genomes]
rs2008495	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2121999	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4241134	0.81[ASN][1000 genomes]
rs4241135	0.81[ASN][1000 genomes]
rs4516432	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4536655	0.81[ASN][1000 genomes]
rs4538209	0.81[ASN][1000 genomes]
rs4849406	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4849407	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4849408	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4849413	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55697033	0.83[ASN][1000 genomes]
rs55913162	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67025581	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67307325	0.82[ASN][1000 genomes]
rs7419743	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7421696	0.81[ASN][1000 genomes]
rs7602082	0.84[ASN][1000 genomes]
rs7604938	0.83[ASN][1000 genomes]
rs9711166	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3388257	chr2:116348771-116365419	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116353000-116354000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:116353200-116354200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:116353400-116354000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:116353400-116354000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:116353600-116354200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:116353600-116354400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:116353600-116354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:116353800-116354200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:116353800-116357200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:116353800-116364000	Weak transcription	H9 Cell Line	embryonic stem cell

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