Variant report

Variant	rs35367066
Chromosome Location	chr3:42862710-42862711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42813432..42816285-chr3:42861675..42864587,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244607	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34543107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34582006	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35247064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35429669	0.81[AFR][1000 genomes]
rs4396867	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953104	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767710	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42857000-42869800	Weak transcription	Colonic Mucosa	Colon
2	chr3:42859600-42863200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr3:42859600-42863200	Enhancers	HepG2	liver
4	chr3:42861000-42862800	Enhancers	Stomach Mucosa	stomach
5	chr3:42861000-42863000	Enhancers	Hela-S3	cervix
6	chr3:42861000-42863400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:42861200-42863000	Enhancers	HMEC	breast
8	chr3:42861200-42864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:42861400-42864400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:42861400-42864400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:42861600-42862800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:42861600-42864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:42861600-42864200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:42861600-42864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:42861600-42873000	Weak transcription	Esophagus	oesophagus
16	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
17	chr3:42861800-42864400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:42861800-42865000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:42861800-42868400	Weak transcription	Liver	Liver
20	chr3:42861800-42872600	Weak transcription	Brain Anterior Caudate	brain
21	chr3:42862200-42864200	Strong transcription	Placenta	Placenta
22	chr3:42862200-42864400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:42862400-42864000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:42862400-42864000	Weak transcription	NHEK	skin
25	chr3:42862400-42864400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:42862400-42864400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:42862400-42872800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:42862600-42863000	Enhancers	Sigmoid Colon	Sigmoid Colon

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