Variant report

Variant	rs35374456
Chromosome Location	chr19:40749078-40749079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:40731149-40781638	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
AKT2	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10411133	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv911699	chr19:40691632-40816530	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	esv1833489	chr19:40722123-40923908	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1062755	chr19:40737463-40758235	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1059094	chr19:40745377-40758235	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40732800-40759000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr19:40735600-40757600	Weak transcription	Stomach Mucosa	stomach
3	chr19:40737600-40749600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr19:40737600-40751200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:40738000-40751600	Strong transcription	Dnd41	blood
6	chr19:40738000-40763800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:40738200-40756200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr19:40738400-40749400	Strong transcription	Fetal Thymus	thymus
9	chr19:40738400-40749600	Strong transcription	Fetal Brain Female	brain
10	chr19:40738800-40749600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr19:40738800-40750800	Weak transcription	Fetal Heart	heart
12	chr19:40738800-40758000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr19:40739000-40749400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:40739000-40751200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr19:40739200-40749400	Strong transcription	Fetal Intestine Large	intestine
16	chr19:40739200-40749600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr19:40739200-40750200	Strong transcription	Fetal Stomach	stomach
18	chr19:40739200-40750800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr19:40739200-40750800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:40739200-40751200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr19:40739200-40751600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr19:40739200-40758400	Strong transcription	Fetal Intestine Small	intestine
23	chr19:40739600-40749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr19:40740600-40749600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:40740800-40749800	Strong transcription	GM12878-XiMat	blood
26	chr19:40741200-40750200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:40741600-40761000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr19:40743200-40760800	Weak transcription	HMEC	breast
29	chr19:40744400-40751000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:40745800-40751000	Weak transcription	NHDF-Ad	bronchial
31	chr19:40745800-40760800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr19:40746200-40749600	Genic enhancers	Spleen	Spleen
33	chr19:40746400-40750800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr19:40746400-40760800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr19:40746600-40758000	Weak transcription	K562	blood
36	chr19:40746800-40750600	Weak transcription	HSMMtube	muscle
37	chr19:40747200-40749600	Enhancers	Brain Substantia Nigra	brain
38	chr19:40747200-40759400	Weak transcription	Hela-S3	cervix
39	chr19:40747200-40760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:40747400-40749400	Enhancers	Brain Anterior Caudate	brain
41	chr19:40747400-40750600	Weak transcription	Fetal Kidney	kidney
42	chr19:40747400-40750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:40747400-40755600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr19:40747400-40755600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr19:40747400-40757600	Weak transcription	HSMM	muscle
46	chr19:40747400-40759200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr19:40747600-40749400	Enhancers	Right Atrium	heart
48	chr19:40747600-40749600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:40747600-40749600	Enhancers	Brain Angular Gyrus	brain
50	chr19:40747600-40749600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links