Variant report

Variant	rs35378456
Chromosome Location	chr5:108325066-108325067
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv4952	chr5:108324146-108369353	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108279200-108325600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:108282400-108327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:108290000-108328800	Weak transcription	Esophagus	oesophagus
4	chr5:108293400-108325600	Weak transcription	NHEK	skin
5	chr5:108294400-108329400	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:108299600-108328800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:108301400-108328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:108302200-108330200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:108303000-108329000	Weak transcription	Gastric	stomach
11	chr5:108303200-108331800	Weak transcription	Ovary	ovary
12	chr5:108304000-108328800	Weak transcription	Fetal Intestine Small	intestine
13	chr5:108308400-108328800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:108308400-108336000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:108309800-108333600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:108314200-108329400	Weak transcription	Adipose Nuclei	Adipose
17	chr5:108317800-108329200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:108319000-108325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:108319600-108325400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:108319600-108325600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:108319800-108325200	Weak transcription	NHDF-Ad	bronchial
22	chr5:108319800-108340800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:108320000-108335000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:108321600-108329400	Weak transcription	Fetal Lung	lung
25	chr5:108322800-108325400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:108322800-108329400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:108323200-108325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:108323200-108325800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:108323800-108329000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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