Variant report

Variant	rs35389352
Chromosome Location	chr7:79764605-79764606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:79763684-79764701	HCT-116	colon:	n/a	n/a
2	RAD21	chr7:79762406-79766777	SK-N-SH	brain:	n/a	chr7:79763992-79764002 chr7:79764180-79764194
3	FOXP2	chr7:79763847-79764885	PFSK-1	brain:	n/a	n/a
4	MYC	chr7:79764411-79764655	MCF-7	breast:	n/a	n/a
5	MAX	chr7:79763725-79764696	HepG2	liver:	n/a	chr7:79764058-79764069
6	TBP	chr7:79763786-79764882	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr7:79764044-79764946	Hela-S3	cervix:	n/a	n/a
8	MAX	chr7:79763531-79764739	A549	lung:	n/a	chr7:79764058-79764069
9	ZBTB7A	chr7:79763553-79765308	ECC-1	luminal epithelium:	n/a	chr7:79764241-79764250 chr7:79763994-79764003
10	RCOR1	chr7:79763431-79764960	Hela-S3	cervix:	n/a	n/a
11	RAD21	chr7:79763278-79764863	H1-hESC	embryonic stem cell:	n/a	chr7:79763992-79764002 chr7:79764180-79764194
12	SIN3AK20	chr7:79763587-79765516	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr7:79764228-79764749	MCF-7	breast:	n/a	n/a
14	TFAP2C	chr7:79763610-79764887	Hela-S3	cervix:	n/a	n/a
15	HA-E2F1	chr7:79763779-79764950	Hela-S3	cervix:	n/a	chr7:79764066-79764080 chr7:79763996-79764006
16	POLR2A	chr7:79763755-79764756	HUVEC	blood vessel:	n/a	n/a
17	POLR2A	chr7:79763976-79765576	H1-neurons	neurons:	n/a	n/a
18	POLR2A	chr7:79764582-79764849	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr7:79764400-79764628	A549	lung:	n/a	n/a
20	CTCF	chr7:79763302-79765750	SK-N-SH	brain:	n/a	chr7:79763991-79764001
21	BHLHE40	chr7:79763694-79764694	HepG2	liver:	n/a	chr7:79764059-79764068 chr7:79764058-79764067 chr7:79764174-79764190 chr7:79764059-79764068
22	POLR2A	chr7:79764102-79764908	Hela-S3	cervix:	n/a	n/a
23	CHD2	chr7:79764325-79764796	HepG2	liver:	n/a	n/a
24	CTBP2	chr7:79763147-79765334	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr7:79763573-79764641	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr7:79764101-79764663	SK-N-SH	brain:	n/a	n/a
27	TAF1	chr7:79763619-79764934	SK-N-SH	brain:	n/a	n/a
28	ZBTB7A	chr7:79763666-79764963	ECC-1	luminal epithelium:	n/a	chr7:79764241-79764250 chr7:79763994-79764003
29	MAX	chr7:79763546-79765448	SK-N-SH	brain:	n/a	chr7:79764967-79764977 chr7:79764058-79764069 chr7:79764874-79764884
30	ZNF143	chr7:79764336-79764674	Hela-S3	cervix:	n/a	n/a
31	TAF1	chr7:79764128-79764781	ECC-1	luminal epithelium:	n/a	n/a
32	TCF12	chr7:79763538-79764962	ECC-1	luminal epithelium:	n/a	n/a
33	CEBPB	chr7:79763575-79766243	Hela-S3	cervix:	n/a	n/a
34	CHD1	chr7:79763433-79765677	IMR90	lung:	n/a	n/a
35	GATA2	chr7:79764217-79765505	SH-SY5Y	brain:	n/a	n/a
36	EP300	chr7:79763325-79765575	SK-N-SH	brain:	n/a	n/a
37	MXI1	chr7:79763348-79764698	H1-hESC	embryonic stem cell:	n/a	n/a
38	MAX	chr7:79763548-79764685	ECC-1	luminal epithelium:	n/a	chr7:79764058-79764069
39	POLR2A	chr7:79763624-79766166	MCF10A-Er-Src	breast:	n/a	n/a
40	SMC3	chr7:79762269-79766686	SK-N-SH	brain:	n/a	chr7:79763992-79764002
41	SIN3A	chr7:79763053-79765518	H1-hESC	embryonic stem cell:	n/a	chr7:79764245-79764258
42	MAX	chr7:79763531-79765159	A549	lung:	n/a	chr7:79764967-79764977 chr7:79764058-79764069 chr7:79764874-79764884
43	SIN3AK20	chr7:79764165-79764844	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr7:79763821-79764631	A549	lung:	n/a	n/a
45	ZKSCAN1	chr7:79763590-79764760	Hela-S3	cervix:	n/a	n/a
46	SMARCC1	chr7:79763339-79765664	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr7:79763774-79764779	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr7:79764096-79764650	SK-N-MC	brain:	n/a	n/a
49	POLR2A	chr7:79763652-79765532	Hela-S3	cervix:	n/a	n/a
50	SMC3	chr7:79763585-79766335	Hela-S3	cervix:	n/a	chr7:79763992-79764002

Variant related genes	Relation type
GNAI1	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79762800-79765800	Active TSS	Stomach Smooth Muscle	stomach
2	chr7:79763200-79765000	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr7:79763200-79765600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:79763200-79766000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr7:79763200-79766200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:79763200-79766400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:79763200-79767000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:79763200-79767000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:79763400-79765000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr7:79763400-79765000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr7:79763400-79765800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:79763400-79765800	Active TSS	Fetal Intestine Large	intestine
13	chr7:79763400-79765800	Active TSS	Rectal Smooth Muscle	rectum
14	chr7:79763400-79766000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr7:79763400-79766000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:79763400-79766000	Active TSS	Fetal Lung	lung
17	chr7:79763400-79766200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:79763400-79766200	Active TSS	Colon Smooth Muscle	Colon
19	chr7:79763400-79766200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr7:79763400-79766400	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr7:79763400-79766600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:79763400-79767000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr7:79763400-79767400	Active TSS	Brain Angular Gyrus	brain
24	chr7:79763600-79765000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
25	chr7:79763600-79765200	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr7:79763600-79765200	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr7:79763600-79765200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr7:79763600-79765400	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr7:79763600-79765400	Active TSS	Gastric	stomach
30	chr7:79763600-79765400	Active TSS	Lung	lung
31	chr7:79763600-79765600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:79763600-79765600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:79763600-79765600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr7:79763600-79765600	Active TSS	Esophagus	oesophagus
35	chr7:79763600-79765600	Active TSS	Left Ventricle	heart
36	chr7:79763600-79765600	Active TSS	Placenta Amnion	Placenta Amnion
37	chr7:79763600-79765800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:79763600-79765800	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr7:79763600-79765800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:79763600-79765800	Active TSS	Fetal Intestine Small	intestine
41	chr7:79763600-79765800	Active TSS	HepG2	liver
42	chr7:79763600-79765800	Active TSS	HSMMtube	muscle
43	chr7:79763600-79766000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:79763600-79766000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:79763600-79766000	Active TSS	Aorta	Aorta
46	chr7:79763600-79766000	Active TSS	Fetal Muscle Trunk	muscle
47	chr7:79763600-79766000	Active TSS	Right Ventricle	heart
48	chr7:79763600-79766000	Active TSS	NHDF-Ad	bronchial
49	chr7:79763600-79766200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:79763600-79766200	Active TSS	Ovary	ovary

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