Variant report

Variant	rs35390985
Chromosome Location	chr1:114082898-114082899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114082118..114084710-chr1:114087135..114089127,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1217216	0.87[ASN][1000 genomes]
rs1217222	0.85[ASN][1000 genomes]
rs1217225	0.87[ASN][1000 genomes]
rs1217231	0.86[ASN][1000 genomes]
rs1343629	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4259646	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7554019	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv946153	chr1:114080236-114088844	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114077600-114083000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:114077800-114083000	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:114077800-114084400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:114077800-114084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:114077800-114084400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:114078000-114090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:114078600-114084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:114078600-114084600	Weak transcription	HSMMtube	muscle
10	chr1:114079200-114083200	Weak transcription	Osteobl	bone
11	chr1:114079400-114084400	Weak transcription	NH-A	brain
12	chr1:114080000-114084400	Weak transcription	NHLF	lung
13	chr1:114080200-114083000	Weak transcription	Ovary	ovary
14	chr1:114080600-114088600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:114081400-114083000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:114081400-114084800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:114081600-114084200	Weak transcription	NHEK	skin
18	chr1:114081600-114084400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:114081600-114084400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:114081600-114084800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:114082400-114083200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr1:114082400-114088400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:114082600-114084800	Enhancers	Fetal Intestine Large	intestine
24	chr1:114082600-114084800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
26	chr1:114082800-114083200	Enhancers	Pancreas	Pancrea
27	chr1:114082800-114083200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr1:114082800-114083200	Flanking Active TSS	NHDF-Ad	bronchial
29	chr1:114082800-114083400	Enhancers	Liver	Liver
30	chr1:114082800-114084600	Enhancers	HepG2	liver
31	chr1:114082800-114085000	Enhancers	Stomach Mucosa	stomach
32	chr1:114082800-114085600	Enhancers	HMEC	breast

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