Variant report

Variant	rs35393501
Chromosome Location	chr8:20957442-20957443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10111769	0.97[ASN][1000 genomes]
rs10112502	0.82[ASN][1000 genomes]
rs10503698	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11784441	0.83[ASN][1000 genomes]
rs11996651	0.81[ASN][1000 genomes]
rs12674821	0.81[ASN][1000 genomes]
rs12675109	0.80[ASN][1000 genomes]
rs12677314	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12678981	0.83[ASN][1000 genomes]
rs12679819	0.82[ASN][1000 genomes]
rs12679855	0.83[ASN][1000 genomes]
rs12680270	0.81[ASN][1000 genomes]
rs12680287	0.81[ASN][1000 genomes]
rs13250583	0.83[ASN][1000 genomes]
rs13258422	0.83[ASN][1000 genomes]
rs13276143	0.89[ASN][1000 genomes]
rs13282584	0.81[ASN][1000 genomes]
rs1563919	0.81[ASN][1000 genomes]
rs1563920	0.81[ASN][1000 genomes]
rs1563921	0.81[ASN][1000 genomes]
rs1841510	0.84[ASN][1000 genomes]
rs34133224	0.83[ASN][1000 genomes]
rs34402513	0.81[ASN][1000 genomes]
rs34437032	0.83[ASN][1000 genomes]
rs35089394	0.80[ASN][1000 genomes]
rs35256844	0.81[ASN][1000 genomes]
rs35508548	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35523999	0.82[ASN][1000 genomes]
rs35555613	0.83[ASN][1000 genomes]
rs35842344	0.88[ASN][1000 genomes]
rs35923081	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3903353	0.87[ASN][1000 genomes]
rs4739209	0.81[ASN][1000 genomes]
rs57399105	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59048764	0.90[ASN][1000 genomes]
rs6985275	0.82[ASN][1000 genomes]
rs7015657	0.89[ASN][1000 genomes]
rs7839300	0.82[ASN][1000 genomes]
rs898648	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20949000-20958200	Weak transcription	Psoas Muscle	Psoas
2	chr8:20953600-20958200	Weak transcription	Adipose Nuclei	Adipose
3	chr8:20956000-20957600	Enhancers	Fetal Brain Female	brain
4	chr8:20956400-20959000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr8:20956400-20959600	Enhancers	Fetal Brain Male	brain
6	chr8:20956600-20958400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:20956600-20958600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:20956600-20958800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:20956600-20959400	Enhancers	Colon Smooth Muscle	Colon
10	chr8:20956600-20959600	Enhancers	Brain Germinal Matrix	brain
11	chr8:20956800-20958600	Enhancers	Right Ventricle	heart
12	chr8:20956800-20958800	Enhancers	Left Ventricle	heart
13	chr8:20956800-20959600	Enhancers	Fetal Heart	heart
14	chr8:20957000-20957600	Enhancers	Brain Hippocampus Middle	brain
15	chr8:20957000-20958000	Weak transcription	Right Atrium	heart
16	chr8:20957000-20959200	Enhancers	Rectal Smooth Muscle	rectum
17	chr8:20957200-20958800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr8:20957400-20957800	Weak transcription	Fetal Stomach	stomach
19	chr8:20957400-20958000	Enhancers	NH-A	brain

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