Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:26592893-26593415	HCT-116	colon:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26269065..26272494-chr6:26592210..26596038,3	MCF-7	breast:
2	chr6:26103023..26105994-chr6:26593160..26595371,2	K562	blood:
3	chr6:26593150..26596471-chr6:27113263..27115419,3	K562	blood:
4	chr6:26593150..26599498-chr6:27112360..27118946,12	K562	blood:
5	chr6:26592995..26594553-chr6:26600001..26601767,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13198716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13201782	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13212985	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13220495	0.84[AFR][1000 genomes]
rs34246779	0.91[AMR][1000 genomes]
rs34781270	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35076545	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35277236	0.91[AMR][1000 genomes]
rs35433030	0.91[AMR][1000 genomes]
rs36162392	0.91[AMR][1000 genomes]
rs45527431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66488313	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66941101	0.91[AMR][1000 genomes]
rs67777156	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71557340	0.91[AMR][1000 genomes]
rs72843784	0.80[EUR][1000 genomes]
rs72845428	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs35400317	BTN3A2	cis	Artery Aorta	GTEx
rs35400317	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs35400317	BTN3A2	cis	Artery Tibial	GTEx
rs35400317	BTN3A2	cis	Muscle Skeletal	GTEx
rs35400317	BTN3A2	cis	Adipose Subcutaneous	GTEx
rs35400317	BTN3A2	cis	lung	GTEx
rs35400317	BTN3A2	cis	Thyroid	GTEx
rs35400317	BTN3A2	cis	Whole Blood	GTEx
rs35400317	BTN3A2	cis	Stomach	GTEx
rs35400317	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs35400317	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs35400317	BTN3A2	cis	Heart Left Ventricle	GTEx
rs35400317	BTN3A2	cis	Esophagus Muscularis	GTEx
rs35400317	BTN3A2	cis	Esophagus Mucosa	GTEx
rs35400317	BTN3A2	cis	Nerve Tibial	GTEx
rs35400317	BTN3A2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26592600-26593600	Enhancers	K562	blood
2	chr6:26593000-26594000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:26593000-26598000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:26593000-26598400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:26593200-26593600	Enhancers	A549	lung
6	chr6:26593200-26594600	Enhancers	HepG2	liver

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