Variant report

Variant	rs35401363
Chromosome Location	chr19:45194327-45194328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:45178714..45181113-chr19:45193983..45195576,2	MCF-7	breast:
2	chr19:45188654..45190939-chr19:45193804..45196138,2	K562	blood:
3	chr19:45192588..45195517-chr19:45250101..45253474,5	MCF-7	breast:
4	chr19:45192349..45194875-chr19:45196468..45199785,3	K562	blood:
5	chr19:45193090..45195982-chr19:45196210..45199723,4	MCF-7	breast:
6	chr19:45191851..45194664-chr19:45200401..45201949,2	K562	blood:
7	chr19:45193565..45195251-chr19:45256112..45257694,2	MCF-7	breast:
8	chr19:45191325..45194588-chr19:45346772..45349538,4	MCF-7	breast:
9	chr19:45193034..45198920-chr19:45224756..45231512,9	MCF-7	breast:
10	chr19:45193665..45201150-chr19:45248511..45253202,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000069399	Chromatin interaction
ENSG00000186567	Chromatin interaction
ENSG00000130202	Chromatin interaction
ENSG00000252200	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12977854	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12984266	0.82[EUR][1000 genomes]
rs34830633	0.89[EUR][1000 genomes]
rs4803740	0.82[EUR][1000 genomes]
rs4803741	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61458713	1.00[ASN][1000 genomes]
rs62119329	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120564	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046432	1.00[ASN][1000 genomes]
rs73561940	1.00[ASN][1000 genomes]
rs73561943	1.00[ASN][1000 genomes]
rs73561968	1.00[ASN][1000 genomes]
rs74172479	1.00[ASN][1000 genomes]
rs8107008	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv9737	chr19:45178110-45206629	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45166000-45197400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:45181600-45198800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:45182400-45195200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:45185000-45195000	Weak transcription	HSMMtube	muscle
5	chr19:45187200-45195200	Weak transcription	Ovary	ovary
6	chr19:45188400-45195400	Weak transcription	Fetal Heart	heart
7	chr19:45188600-45195200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:45189400-45195000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:45189400-45195000	Weak transcription	NHLF	lung
10	chr19:45189600-45195000	Weak transcription	NH-A	brain
11	chr19:45189600-45195000	Weak transcription	NHDF-Ad	bronchial
12	chr19:45189600-45195000	Weak transcription	Osteobl	bone
13	chr19:45190200-45194800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr19:45190600-45195000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:45190600-45195000	Weak transcription	HSMM	muscle
16	chr19:45191600-45195000	Weak transcription	Primary B cells from cord blood	blood
17	chr19:45192400-45195000	Enhancers	GM12878-XiMat	blood
18	chr19:45192400-45202000	Enhancers	Liver	Liver
19	chr19:45192600-45195000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:45192600-45195000	Weak transcription	NHEK	skin
21	chr19:45192600-45195200	Weak transcription	Right Atrium	heart
22	chr19:45192800-45194800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr19:45192800-45195000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:45192800-45195000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr19:45192800-45195000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr19:45192800-45195000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:45192800-45195200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr19:45193000-45194400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr19:45193000-45194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr19:45193000-45194800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:45193000-45194800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr19:45193000-45194800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:45193000-45195000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr19:45193000-45195000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:45193000-45195000	Weak transcription	HMEC	breast
36	chr19:45193000-45195000	Weak transcription	K562	blood
37	chr19:45193000-45195200	Weak transcription	Fetal Muscle Leg	muscle
38	chr19:45193000-45195200	Weak transcription	Placenta	Placenta
39	chr19:45193000-45195200	Weak transcription	Fetal Thymus	thymus
40	chr19:45193000-45195200	Weak transcription	Left Ventricle	heart
41	chr19:45193000-45195200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr19:45193000-45195200	Weak transcription	Small Intestine	intestine
43	chr19:45193000-45195600	Weak transcription	Right Ventricle	heart
44	chr19:45193000-45200200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr19:45193000-45200600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr19:45193200-45194800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr19:45193200-45195000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr19:45193200-45195000	Weak transcription	Gastric	stomach
49	chr19:45193200-45195200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr19:45193400-45194600	Weak transcription	Primary monocytes fromperipheralblood	blood

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